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Aliases for GC18M046122 Gene

Subcategory (RNA class) for GC18M046122 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC18M046122 Gene

No Aliases found

ORGUL Members for GC18M046122 Gene

No data available for External Ids for GC18M046122 Gene

Summaries for GC18M046122 Gene

GeneCards Summary for GC18M046122 Gene

GC18M046122 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC18M046122 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC18M046122 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M046122 Gene

Genomics for GC18M046122 Gene

GeneHancer (GH) Regulatory Elements for GC18M046122 Gene

Promoters and enhancers for GC18M046122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J046103 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +17.1 17147 1.7 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 ETS1 ZNF121 POLR2B GLIS2 HAUS1 ATP5F1A GC18M046122 RNU6-1278P
GH18J046151 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.3 -31.3 -31287 2.2 PKNOX1 ARNT SIN3A NCOA2 TCF12 ZNF766 GLIS2 GATA2 E2F8 FOS C18orf25 PSTPIP2 RNF165 GC18M046141 GC18M046122 RNU6-1278P
GH18J046148 Enhancer 0.8 Ensembl ENCODE 0.3 -27.3 -27289 1.2 CTCF PKNOX1 ZNF654 USF1 TRIM22 REST RAD21 ARID2 ZNF143 SMC3 HAUS1 C18orf25 GC18M046141 GC18M046122 RNU6-1278P
GH18J046155 Enhancer 0.8 Ensembl ENCODE 0.3 -34.5 -34522 2.3 STAT1 JUND MAFF GATA2 JUN CEBPB FOSL2 FOS C18orf25 EPG5 GC18M046141 GC18M046122 RNU6-1278P
GH18J046113 Enhancer 0.5 ENCODE 0.4 +7.7 7731 0.2 NCOA3 ZNF217 CTBP1 ESRRA GATA3 GC18M046122 HAUS1 RNU6-1278P ATP5F1A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M046122 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M046122 Gene

Genomic Locations for GC18M046122 Gene
chr18:46,121,614-46,121,721
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC18M046122 Gene

Genes around GC18M046122 on UCSC Golden Path with GeneCards custom track

GC18M046122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M046122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M046122 Gene

Proteins for GC18M046122 Gene

Post-translational modifications for GC18M046122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M046122 Gene

Domains & Families for GC18M046122 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M046122 Gene

Function for GC18M046122 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M046122 Gene

Localization for GC18M046122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M046122 Gene

Pathways & Interactions for GC18M046122 Gene

SuperPathways for GC18M046122 Gene

No Data Available

Interacting Proteins for GC18M046122 Gene

Gene Ontology (GO) - Biological Process for GC18M046122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M046122 Gene

Drugs & Compounds for GC18M046122 Gene

No Compound Related Data Available

Transcripts for GC18M046122 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M046122 Gene

No ASD Table

Relevant External Links for GC18M046122 Gene

GeneLoc Exon Structure for
GC18M046122

No data available for mRNA/cDNA for GC18M046122 Gene

Expression for GC18M046122 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M046122 Gene

Orthologs for GC18M046122 Gene

No data available for Orthologs and Evolution for GC18M046122 Gene

Paralogs for GC18M046122 Gene

No data available for Paralogs for GC18M046122 Gene

Variants for GC18M046122 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M046122 Gene

Disorders for GC18M046122 Gene

No disorders were found for GC18M046122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M046122 Gene

Publications for GC18M046122 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC18M046122 Gene

Sources for GC18M046122 Gene

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