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Aliases for GC18M006019 Gene

Subcategory (RNA class) for GC18M006019 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC18M006019 Gene

No Aliases found

ORGUL Members for GC18M006019 Gene

No data available for External Ids for GC18M006019 Gene

Summaries for GC18M006019 Gene

GeneCards Summary for GC18M006019 Gene

GC18M006019 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC18M006019 Gene

  • U5_snRNA: U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation.

Additional gene information for GC18M006019 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M006019 Gene

Genomics for GC18M006019 Gene

GeneHancer (GH) Regulatory Elements for GC18M006019 Gene

Promoters and enhancers for GC18M006019 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I005998 Enhancer 0.8 ENCODE 0.4 +19.2 19181 0 FOXA2 MLX ARID4B RAD21 RARA YY1 CREM RXRA SP5 CEBPB GC18M006019 RNU5F-3P ENSG00000265487 L3MBTL4
GH18I005974 Enhancer 0.9 Ensembl ENCODE 0.3 +42.7 42659 1 EBF1 RBBP5 BATF NFATC1 ATF7 FOS IKZF2 RUNX3 SMARCA5 CBFB ENSG00000265487 RNU5F-3P GC18M006019 L3MBTL4
GH18I006021 Enhancer 0.3 FANTOM5 0.8 -3.5 -3544 0.5 ENSG00000266846 GC18M006019 RNU5F-3P L3MBTL4
GH18I005979 Enhancer 0.6 ENCODE 0.3 +37.9 37916 0.8 EBF1 ELF1 BATF ATF2 RELA IKZF1 MLLT1 BCLAF1 IKZF2 RUNX3 ENSG00000265487 RNU5F-3P GC18M006019 L3MBTL4
GH18I006022 Enhancer 0.4 ENCODE 0.4 -5.2 -5218 0.2 STAT1 GLIS1 ZIC2 ENSG00000266846 GC18M006019 RNU5F-3P L3MBTL4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M006019 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M006019 Gene

Genomic Locations for GC18M006019 Gene
chr18:6,017,722-6,017,839
(GRCh38/hg38)
Size:
118 bases
Orientation:
Minus strand

Genomic View for GC18M006019 Gene

Genes around GC18M006019 on UCSC Golden Path with GeneCards custom track

GC18M006019 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M006019 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M006019 Gene

Proteins for GC18M006019 Gene

Post-translational modifications for GC18M006019 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M006019 Gene

Domains & Families for GC18M006019 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M006019 Gene

Function for GC18M006019 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M006019 Gene

Localization for GC18M006019 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M006019 Gene

Pathways & Interactions for GC18M006019 Gene

SuperPathways for GC18M006019 Gene

No Data Available

Interacting Proteins for GC18M006019 Gene

Gene Ontology (GO) - Biological Process for GC18M006019 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M006019 Gene

Drugs & Compounds for GC18M006019 Gene

No Compound Related Data Available

Transcripts for GC18M006019 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M006019 Gene

No ASD Table

Relevant External Links for GC18M006019 Gene

GeneLoc Exon Structure for
GC18M006019

No data available for mRNA/cDNA for GC18M006019 Gene

Expression for GC18M006019 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M006019 Gene

Orthologs for GC18M006019 Gene

No data available for Orthologs and Evolution for GC18M006019 Gene

Paralogs for GC18M006019 Gene

No data available for Paralogs for GC18M006019 Gene

Variants for GC18M006019 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M006019 Gene

Disorders for GC18M006019 Gene

No disorders were found for GC18M006019 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M006019 Gene

Publications for GC18M006019 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Domain analysis of human U5 RNA. Cap trimethylation, protein binding, and spliceosome assembly. (PMID: 8702566) Hinz M … Bindereif A (The Journal of biological chemistry 1996) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC18M006019 Gene

Sources for GC18M006019 Gene

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