Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC18M000797 Gene

Subcategory (RNA class) for GC18M000797 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC18M000797 Gene

No Aliases found

ORGUL Members for GC18M000797 Gene

No data available for External Ids for GC18M000797 Gene

Summaries for GC18M000797 Gene

GeneCards Summary for GC18M000797 Gene

GC18M000797 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC18M000797 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC18M000797 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC18M000797 Gene

Genomics for GC18M000797 Gene

GeneHancer (GH) Regulatory Elements for GC18M000797 Gene

Promoters and enhancers for GC18M000797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J000806 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.9 -12903 8.3 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YES1 GC18P000814 ENOSF1 THOC1 ENSG00000273355 TYMS GC18M000797 RNU1-109P
GH18J000804 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -7.3 -7273 1.5 SMARCE1 NR2F1 PAX8 BMI1 ELF1 E4F1 YY1 SKIL SMARCA4 IKZF1 ENOSF1 ENSG00000273355 GC18P000814 RNU1-109P YES1 GC18M000797
GH18J000807 Enhancer 0.6 ENCODE dbSUPER 0.4 -8.5 -8500 0.2 CTBP1 HDAC2 SP7 GC18P000814 RNU1-109P YES1 GC18M000797
GH18J000769 Enhancer 0.8 ENCODE 0.3 +27.3 27340 2.1 FOXA2 ARID4B CREM MIXL1 HMG20B SMAD5 SP5 PPARG TGIF2 NFIL3 ENOSF1 ENSG00000273355 GC18M000797 RNU1-109P ENSG00000264635 YES1
GH18J000778 Enhancer 0.6 ENCODE 0.4 +19.5 19549 0.9 FOXA2 SMAD5 GATAD2B FEZF1 PRDM6 NFIC POLR2A IKZF1 CREB1 PRDM10 ENSG00000273355 GC18M000797 RNU1-109P YES1 ENSG00000264635
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC18M000797 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC18M000797 Gene

Genomic Locations for GC18M000797 Gene
chr18:797,988-798,135
(GRCh38/hg38)
Size:
148 bases
Orientation:
Minus strand

Genomic View for GC18M000797 Gene

Genes around GC18M000797 on UCSC Golden Path with GeneCards custom track

GC18M000797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC18M000797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC18M000797 Gene

Proteins for GC18M000797 Gene

Post-translational modifications for GC18M000797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC18M000797 Gene

Domains & Families for GC18M000797 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC18M000797 Gene

Function for GC18M000797 Gene

Phenotypes From GWAS Catalog for GC18M000797 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC18M000797 Gene

Localization for GC18M000797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC18M000797 Gene

Pathways & Interactions for GC18M000797 Gene

SuperPathways for GC18M000797 Gene

No Data Available

Interacting Proteins for GC18M000797 Gene

Gene Ontology (GO) - Biological Process for GC18M000797 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC18M000797 Gene

Drugs & Compounds for GC18M000797 Gene

No Compound Related Data Available

Transcripts for GC18M000797 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC18M000797 Gene

No ASD Table

Relevant External Links for GC18M000797 Gene

GeneLoc Exon Structure for
GC18M000797

No data available for mRNA/cDNA for GC18M000797 Gene

Expression for GC18M000797 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC18M000797 Gene

Orthologs for GC18M000797 Gene

No data available for Orthologs and Evolution for GC18M000797 Gene

Paralogs for GC18M000797 Gene

No data available for Paralogs for GC18M000797 Gene

Variants for GC18M000797 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC18M000797 Gene

Disorders for GC18M000797 Gene

No disorders were found for GC18M000797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC18M000797 Gene

Publications for GC18M000797 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

Products for GC18M000797 Gene

Sources for GC18M000797 Gene

Content
Loading form....