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Aliases for GC17P081274 Gene

Subcategory (RNA class) for GC17P081274 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC17P081274 Gene

No Aliases found

ORGUL Members for GC17P081274 Gene

No data available for External Ids for GC17P081274 Gene

Summaries for GC17P081274 Gene

GeneCards Summary for GC17P081274 Gene

GC17P081274 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC17P081274 Gene

  • U2_snRNA: U2 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing.

Additional gene information for GC17P081274 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P081274 Gene

Genomics for GC17P081274 Gene

GeneHancer (GH) Regulatory Elements for GC17P081274 Gene

Promoters and enhancers for GC17P081274 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I081272 Enhancer 0.7 Ensembl dbSUPER 550.8 -1.7 -1713 0.2 GATA3 MAX MYC GABPA GC17P081274 NDUFAF8 TMEM105 SLC38A10 ENSG00000279187
GH17I081273 Enhancer 0.4 Ensembl dbSUPER 550.8 -1.3 -1313 0.2 GC17P081274 TMEM105 SLC38A10 ENSG00000279187
GH17I081276 Enhancer 0.9 ENCODE dbSUPER 0.8 +3.3 3343 2 NFIB SIN3A ZIC2 E2F1 ZFHX2 CTBP1 GATA3 GLIS2 RCOR1 HES1 NDUFAF8 TMEM105 LINC00482 SLC38A10 GC17P081274
GH17I081284 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.2 12150 3.8 ATF1 YY1 ZNF766 ZNF207 ZNF143 ATF7 ZNF592 MBD2 MEF2D GMEB1 SLC38A10 TMEM105 CEP131 LOC100294362 CCDC57 ENDOV LINC00482 GPS1 ENSG00000265678 ARL16
GH17I081294 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 +20.8 20817 2.7 HDGF CLOCK SMAD1 FOXA2 ARNT ZFP64 ARID4B SIN3A YY1 POLR2B SLC38A10 NDUFAF8 CSNK1D FAAP100 TEPSIN ENSG00000260563 ENSG00000265678 HGS GC17P081274
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P081274 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P081274 Gene

Genomic Locations for GC17P081274 Gene
chr17:81,274,614-81,274,805
(GRCh38/hg38)
Size:
192 bases
Orientation:
Plus strand

Genomic View for GC17P081274 Gene

Genes around GC17P081274 on UCSC Golden Path with GeneCards custom track

GC17P081274 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P081274 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P081274 Gene

Proteins for GC17P081274 Gene

Post-translational modifications for GC17P081274 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P081274 Gene

Domains & Families for GC17P081274 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P081274 Gene

Function for GC17P081274 Gene

Phenotypes From GWAS Catalog for GC17P081274 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P081274 Gene

Localization for GC17P081274 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P081274 Gene

Pathways & Interactions for GC17P081274 Gene

SuperPathways for GC17P081274 Gene

No Data Available

Interacting Proteins for GC17P081274 Gene

Gene Ontology (GO) - Biological Process for GC17P081274 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P081274 Gene

Drugs & Compounds for GC17P081274 Gene

No Compound Related Data Available

Transcripts for GC17P081274 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P081274 Gene

No ASD Table

Relevant External Links for GC17P081274 Gene

GeneLoc Exon Structure for
GC17P081274

No data available for mRNA/cDNA for GC17P081274 Gene

Expression for GC17P081274 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P081274 Gene

Orthologs for GC17P081274 Gene

No data available for Orthologs and Evolution for GC17P081274 Gene

Paralogs for GC17P081274 Gene

No data available for Paralogs for GC17P081274 Gene

Variants for GC17P081274 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P081274 Gene

Disorders for GC17P081274 Gene

No disorders were found for GC17P081274 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P081274 Gene

Publications for GC17P081274 Gene

  1. Crystal structure of a model branchpoint-U2 snRNA duplex containing bulged adenosines. (PMID: 11350032) Berglund JA … Schultz SC (RNA (New York, N.Y.) 2001) 1
  2. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. (PMID: 11424937) Newby MI … Greenbaum NL (RNA (New York, N.Y.) 2001) 1
  3. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  4. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC17P081274 Gene

Sources for GC17P081274 Gene

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