Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC17P079785 Gene

Subcategory (RNA class) for GC17P079785 Gene

lncRNA

Quality Score for this RNA gene is

0.2

Aliases for GC17P079785 Gene

No Aliases found

ORGUL Members for GC17P079785 Gene

No data available for External Ids for GC17P079785 Gene

Summaries for GC17P079785 Gene

GeneCards Summary for GC17P079785 Gene

GC17P079785 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC17P079785 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P079785

Additional gene information for GC17P079785 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P079785 Gene

Genomics for GC17P079785 Gene

GeneHancer (GH) Regulatory Elements for GC17P079785 Gene

Promoters and enhancers for GC17P079785 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I079786 Enhancer 0.6 dbSUPER 550.8 +1.4 1420 0.5 PAF1 SIN3A ELF1 ZNF48 GLIS2 POLR2A ZNF341 ZNF600 ZBTB17 GC17P079785 CBX2 ENSG00000262768
GH17I079796 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 +11.4 11431 2.1 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B CBX8 USP36 CBX4 ENSG00000262768 GC17P079785
GH17I079790 Enhancer 1 ENCODE dbSUPER 0.8 +4.4 4427 0.2 RB1 ARID4B SIN3A ZNF48 RAD21 ARID2 ZNF143 CREM THAP11 ZNF263 CBX4 GC17P079785 ENSG00000262768
GH17I079776 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -7.7 -7661 3.2 FOXA2 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC30A9 POLR2B CBX2 GC17M079773 USP36 GC17P079785
GH17I079792 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +8.1 8122 3.2 KLF17 MZF1 SIN3A RFX5 ZNF121 ZNF366 ZSCAN5C ZNF680 ZNF362 SMARCC1 CBX8 CBX4 ENSG00000262768 GC17P079785
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P079785 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P079785 Gene

Genomic Locations for GC17P079785 Gene
chr17:79,785,630-79,787,983
(GRCh38/hg38)
Size:
2,354 bases
Orientation:
Plus strand

Genomic View for GC17P079785 Gene

Genes around GC17P079785 on UCSC Golden Path with GeneCards custom track

GC17P079785 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P079785 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P079785 Gene

ORGUL Member Location for GC17P079785 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P079785 Gene

Proteins for GC17P079785 Gene

Post-translational modifications for GC17P079785 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P079785 Gene

Domains & Families for GC17P079785 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P079785 Gene

Function for GC17P079785 Gene

Phenotypes From GWAS Catalog for GC17P079785 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P079785 Gene

Localization for GC17P079785 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P079785 Gene

Pathways & Interactions for GC17P079785 Gene

SuperPathways for GC17P079785 Gene

No Data Available

Interacting Proteins for GC17P079785 Gene

Gene Ontology (GO) - Biological Process for GC17P079785 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P079785 Gene

Drugs & Compounds for GC17P079785 Gene

No Compound Related Data Available

Transcripts for GC17P079785 Gene

fRNAdb Secondary structures for GC17P079785 Gene

  • FR163898

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P079785 Gene

No ASD Table

Relevant External Links for GC17P079785 Gene

GeneLoc Exon Structure for
GC17P079785

No data available for mRNA/cDNA for GC17P079785 Gene

Expression for GC17P079785 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P079785 Gene

Orthologs for GC17P079785 Gene

No data available for Orthologs and Evolution for GC17P079785 Gene

Paralogs for GC17P079785 Gene

No data available for Paralogs for GC17P079785 Gene

Variants for GC17P079785 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P079785 Gene

Disorders for GC17P079785 Gene

No disorders were found for GC17P079785 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P079785 Gene

Publications for GC17P079785 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC17P079785 Gene

Sources for GC17P079785 Gene

Content
Loading form....