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Aliases for GC17P078105 Gene

Subcategory (RNA class) for GC17P078105 Gene

lncRNA

Quality Score for this RNA gene is

0.2

Aliases for GC17P078105 Gene

No Aliases found

ORGUL Members for GC17P078105 Gene

No data available for External Ids for GC17P078105 Gene

Summaries for GC17P078105 Gene

GeneCards Summary for GC17P078105 Gene

GC17P078105 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC17P078105 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P078105

Additional gene information for GC17P078105 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P078105 Gene

Genomics for GC17P078105 Gene

GeneHancer (GH) Regulatory Elements for GC17P078105 Gene

Promoters and enhancers for GC17P078105 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I078105 Enhancer 0.8 ENCODE dbSUPER 550.8 +0.5 515 0.9 SOX13 GATAD2A FOXA2 SAP130 FOXA3 ARID4B ZNF384 NFIL3 BCL6 ZBTB33 GC17P078105 GC17P078107 TNRC6C
GH17I078102 Enhancer 0.3 dbSUPER 550.8 -1.7 -1675 2.1 ZNF121 GC17P078105 TNRC6C RNU6-625P
GH17I078082 Enhancer 1.1 ENCODE dbSUPER 0.3 -22.8 -22836 0.2 ATF1 ARNT NCOA2 TCF12 ZNF766 E2F8 NCOA1 REST ZNF592 MEF2D RNU6-625P GC17P078105 TNRC6C
GH17I078080 Enhancer 0.9 dbSUPER 0.3 -23.9 -23942 2 HDAC1 ATF1 TAF9B RB1 ARNT CHAMP1 NCOA2 TCF12 ZNF766 E2F8 TNRC6C-AS1 TNRC6C RNU6-625P GC17P078105
GH17I078085 Enhancer 0.9 ENCODE dbSUPER 0.3 -20.3 -20316 0.2 ELF3 CTCF SAP130 ARID4B CEBPG ZNF2 ZSCAN9 RAD21 CHAMP1 CC2D1A RNU6-625P GC17P078105 TNRC6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P078105 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P078105 Gene

Genomic Locations for GC17P078105 Gene
chr17:78,105,451-78,106,868
(GRCh38/hg38)
Size:
1,418 bases
Orientation:
Plus strand

Genomic View for GC17P078105 Gene

Genes around GC17P078105 on UCSC Golden Path with GeneCards custom track

GC17P078105 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P078105 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P078105 Gene

ORGUL Member Location for GC17P078105 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P078105 Gene

Proteins for GC17P078105 Gene

Post-translational modifications for GC17P078105 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P078105 Gene

Domains & Families for GC17P078105 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P078105 Gene

Function for GC17P078105 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P078105 Gene

Localization for GC17P078105 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P078105 Gene

Pathways & Interactions for GC17P078105 Gene

SuperPathways for GC17P078105 Gene

No Data Available

Interacting Proteins for GC17P078105 Gene

Gene Ontology (GO) - Biological Process for GC17P078105 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P078105 Gene

Drugs & Compounds for GC17P078105 Gene

No Compound Related Data Available

Transcripts for GC17P078105 Gene

fRNAdb Secondary structures for GC17P078105 Gene

  • FR290977
  • FR344012

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P078105 Gene

No ASD Table

Relevant External Links for GC17P078105 Gene

GeneLoc Exon Structure for
GC17P078105

No data available for mRNA/cDNA for GC17P078105 Gene

Expression for GC17P078105 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P078105 Gene

Orthologs for GC17P078105 Gene

No data available for Orthologs and Evolution for GC17P078105 Gene

Paralogs for GC17P078105 Gene

No data available for Paralogs for GC17P078105 Gene

Variants for GC17P078105 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P078105 Gene

Disorders for GC17P078105 Gene

No disorders were found for GC17P078105 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P078105 Gene

Publications for GC17P078105 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC17P078105 Gene

Sources for GC17P078105 Gene

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