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Aliases for GC17P077921 Gene

Subcategory (RNA class) for GC17P077921 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC17P077921 Gene

No Aliases found

ORGUL Members for GC17P077921 Gene

No data available for External Ids for GC17P077921 Gene

Summaries for GC17P077921 Gene

GeneCards Summary for GC17P077921 Gene

GC17P077921 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC17P077921 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC17P077921 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P077921 Gene

Genomics for GC17P077921 Gene

GeneHancer (GH) Regulatory Elements for GC17P077921 Gene

Promoters and enhancers for GC17P077921 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I077916 Enhancer 0.8 Ensembl ENCODE 0.8 -3.1 -3050 0.7 CTCF PKNOX1 EBF1 DPF2 IRF4 ZNF366 POLR2A IKZF1 CUX1 IKZF2 GC17P077921 LINC01973
GH17I077887 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -32.2 -32228 1.6 PKNOX1 ATF1 ARID4B ZNF2 GLIS2 ATF7 SP3 ZHX2 ZNF592 ATF4 TMC8 TNRC6C TMC6 PGS1 SOCS3 LINC01973 GC17P077921
GH17I077886 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -33.6 -33585 0.6 HDAC1 PKNOX1 ZBTB40 SCRT2 ATF7 CEBPB ZEB2 ATF4 PBX2 CEBPA PGS1 SOCS3 TMC6 LINC01973 GC17P077921
GH17I077914 Enhancer 0.6 ENCODE 0.4 -5.3 -5263 0.2 CTCF MAZ MZF1 ZBTB8A RAD21 ZSCAN21 ZNF335 GLIS2 ZNF366 GLIS1 LINC01973 GC17P077921
GH17I077893 Enhancer 0.7 ENCODE 0.3 -27.5 -27523 0.2 MEIS2 CTCF PKNOX1 TEAD4 RAD21 TEAD3 FOSL1 CTBP1 ZNF143 NR2F6 LINC01973 GC17P077921
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P077921 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P077921 Gene

Genomic Locations for GC17P077921 Gene
chr17:77,920,097-77,920,258
(GRCh38/hg38)
Size:
162 bases
Orientation:
Plus strand

Genomic View for GC17P077921 Gene

Genes around GC17P077921 on UCSC Golden Path with GeneCards custom track

GC17P077921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P077921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P077921 Gene

Proteins for GC17P077921 Gene

Post-translational modifications for GC17P077921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P077921 Gene

Domains & Families for GC17P077921 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P077921 Gene

Function for GC17P077921 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P077921 Gene

Localization for GC17P077921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P077921 Gene

Pathways & Interactions for GC17P077921 Gene

SuperPathways for GC17P077921 Gene

No Data Available

Interacting Proteins for GC17P077921 Gene

Gene Ontology (GO) - Biological Process for GC17P077921 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P077921 Gene

Drugs & Compounds for GC17P077921 Gene

No Compound Related Data Available

Transcripts for GC17P077921 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P077921 Gene

No ASD Table

Relevant External Links for GC17P077921 Gene

GeneLoc Exon Structure for
GC17P077921

No data available for mRNA/cDNA for GC17P077921 Gene

Expression for GC17P077921 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P077921 Gene

Orthologs for GC17P077921 Gene

No data available for Orthologs and Evolution for GC17P077921 Gene

Paralogs for GC17P077921 Gene

No data available for Paralogs for GC17P077921 Gene

Variants for GC17P077921 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P077921 Gene

Disorders for GC17P077921 Gene

No disorders were found for GC17P077921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P077921 Gene

Publications for GC17P077921 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

Products for GC17P077921 Gene

Sources for GC17P077921 Gene

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