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Aliases for GC17P077097 Gene

Subcategory (RNA class) for GC17P077097 Gene

scaRNA

Quality Score for this RNA gene is

9.2

Aliases for GC17P077097 Gene

No Aliases found

No data available for External Ids for GC17P077097 Gene

Summaries for GC17P077097 Gene

GeneCards Summary for GC17P077097 Gene

GC17P077097 is an RNA Gene, and is affiliated with the scaRNA class.

fRNAdb sequence ontologies for GC17P077097 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • snoRNA: A snoRNA (small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.

View fRNAdb secondary structures for GC17P077097

Additional gene information for GC17P077097 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P077097 Gene

Genomics for GC17P077097 Gene

GeneHancer (GH) Regulatory Elements for GC17P077097 Gene

Promoters and enhancers for GC17P077097 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I077087 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.2 159 3.2 HDGF PKNOX1 CLOCK MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B GC17P077093 GC17P077097 GC17P077098 MIR6516 SCARNA16 SEC14L1 SRSF2 METTL23 MFSD11 SEPT9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P077097 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P077097 Gene

Genomic Locations for GC17P077097 Gene
chr17:77,089,305-77,089,493
(GRCh38/hg38)
Size:
189 bases
Orientation:
Plus strand

Genomic View for GC17P077097 Gene

Genes around GC17P077097 on UCSC Golden Path with GeneCards custom track

GC17P077097 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P077097 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P077097 Gene

ORGUL Member Location for GC17P077097 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P077097 Gene

Proteins for GC17P077097 Gene

Post-translational modifications for GC17P077097 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P077097 Gene

Domains & Families for GC17P077097 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P077097 Gene

Function for GC17P077097 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P077097 Gene

Localization for GC17P077097 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P077097 Gene

Pathways & Interactions for GC17P077097 Gene

SuperPathways for GC17P077097 Gene

No Data Available

Interacting Proteins for GC17P077097 Gene

Gene Ontology (GO) - Biological Process for GC17P077097 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P077097 Gene

Drugs & Compounds for GC17P077097 Gene

No Compound Related Data Available

Transcripts for GC17P077097 Gene

fRNAdb Secondary structures for GC17P077097 Gene

  • FR212770

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P077097 Gene

No ASD Table

Relevant External Links for GC17P077097 Gene

GeneLoc Exon Structure for
GC17P077097

No data available for mRNA/cDNA for GC17P077097 Gene

Expression for GC17P077097 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P077097 Gene

Orthologs for GC17P077097 Gene

No data available for Orthologs and Evolution for GC17P077097 Gene

Paralogs for GC17P077097 Gene

No data available for Paralogs for GC17P077097 Gene

Variants for GC17P077097 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P077097 Gene

Disorders for GC17P077097 Gene

No disorders were found for GC17P077097 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P077097 Gene

Publications for GC17P077097 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  5. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC17P077097 Gene

Sources for GC17P077097 Gene

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