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Aliases for GC17P076607 Gene

Subcategory (RNA class) for GC17P076607 Gene

snoRNA

Quality Score for this RNA gene is

9

Aliases for GC17P076607 Gene

No Aliases found

No data available for External Ids for GC17P076607 Gene

Summaries for GC17P076607 Gene

GeneCards Summary for GC17P076607 Gene

GC17P076607 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC17P076607 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC17P076607

Additional gene information for GC17P076607 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P076607 Gene

Genomics for GC17P076607 Gene

GeneHancer (GH) Regulatory Elements for GC17P076607 Gene

Promoters and enhancers for GC17P076607 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I076555 Promoter/Enhancer 1.8 Ensembl ENCODE 0.8 -2.2 -2174 8.1 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF143 SP3 NFYC ZNF610 SNHG16 ENSG00000267546 CYGB GC17P076601 PIR56918 SNORD1B SNORD1C PIR59539 GC17P076618 GC17P076616
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P076607 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P076607 Gene

Genomic Locations for GC17P076607 Gene
chr17:76,561,632-76,561,706
(GRCh38/hg38)
Size:
75 bases
Orientation:
Plus strand

Genomic View for GC17P076607 Gene

Genes around GC17P076607 on UCSC Golden Path with GeneCards custom track

GC17P076607 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P076607 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P076607 Gene

ORGUL Member Location for GC17P076607 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P076607 Gene

Proteins for GC17P076607 Gene

Post-translational modifications for GC17P076607 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P076607 Gene

Domains & Families for GC17P076607 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P076607 Gene

Function for GC17P076607 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P076607 Gene

Localization for GC17P076607 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P076607 Gene

Pathways & Interactions for GC17P076607 Gene

SuperPathways for GC17P076607 Gene

No Data Available

Interacting Proteins for GC17P076607 Gene

Gene Ontology (GO) - Biological Process for GC17P076607 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P076607 Gene

Drugs & Compounds for GC17P076607 Gene

No Compound Related Data Available

Transcripts for GC17P076607 Gene

fRNAdb Secondary structures for GC17P076607 Gene

  • FR270821
  • FR132483
  • FR355542

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P076607 Gene

No ASD Table

Relevant External Links for GC17P076607 Gene

GeneLoc Exon Structure for
GC17P076607

No data available for mRNA/cDNA for GC17P076607 Gene

Expression for GC17P076607 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P076607 Gene

Orthologs for GC17P076607 Gene

No data available for Orthologs and Evolution for GC17P076607 Gene

Paralogs for GC17P076607 Gene

No data available for Paralogs for GC17P076607 Gene

Variants for GC17P076607 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P076607 Gene

Disorders for GC17P076607 Gene

No disorders were found for GC17P076607 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P076607 Gene

Publications for GC17P076607 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 1
  5. The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa. (PMID: 12736310) Chen CL … Qu LH (Nucleic acids research 2003) 1

Products for GC17P076607 Gene

Sources for GC17P076607 Gene

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