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Aliases for GC17P067742 Gene

Subcategory (RNA class) for GC17P067742 Gene

snoRNA

Quality Score for this RNA gene is

2.2

Aliases for GC17P067742 Gene

No Aliases found

ORGUL Members for GC17P067742 Gene

No data available for External Ids for GC17P067742 Gene

Summaries for GC17P067742 Gene

GeneCards Summary for GC17P067742 Gene

GC17P067742 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC17P067742 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P067742

Additional gene information for GC17P067742 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P067742 Gene

Genomics for GC17P067742 Gene

GeneHancer (GH) Regulatory Elements for GC17P067742 Gene

Promoters and enhancers for GC17P067742 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I067716 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 -22.8 -22791 3.1 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NOL11 LOC101928045 BPTF HELZ WIPI1 GC17P067742
GH17I067726 Enhancer 0.7 ENCODE 0.4 -13.2 -13183 2.1 SOX13 FOXA2 ZNF792 SAP130 ARID4B MAX ZNF384 CEBPG DMAP1 ZNF644 NOL11 GC17P067742
GH17I067724 Enhancer 0.4 ENCODE 0.4 -15.0 -15028 1.3 HDGF NFIL3 NOL11 GC17P067742
GH17I067732 Enhancer 0.3 ENCODE 0.4 -7.1 -7083 1.3 POU5F1 GC17P067742 NOL11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P067742 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P067742 Gene

Genomic Locations for GC17P067742 Gene
chr17:67,740,668-67,740,799
(GRCh38/hg38)
Size:
132 bases
Orientation:
Plus strand

Genomic View for GC17P067742 Gene

Genes around GC17P067742 on UCSC Golden Path with GeneCards custom track

GC17P067742 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P067742 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P067742 Gene

ORGUL Member Location for GC17P067742 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P067742 Gene

Proteins for GC17P067742 Gene

Post-translational modifications for GC17P067742 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P067742 Gene

Domains & Families for GC17P067742 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P067742 Gene

Function for GC17P067742 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P067742 Gene

Localization for GC17P067742 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P067742 Gene

Pathways & Interactions for GC17P067742 Gene

SuperPathways for GC17P067742 Gene

No Data Available

Interacting Proteins for GC17P067742 Gene

Gene Ontology (GO) - Biological Process for GC17P067742 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P067742 Gene

Drugs & Compounds for GC17P067742 Gene

No Compound Related Data Available

Transcripts for GC17P067742 Gene

fRNAdb Secondary structures for GC17P067742 Gene

  • FR368312
  • FR208337

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P067742 Gene

No ASD Table

Relevant External Links for GC17P067742 Gene

GeneLoc Exon Structure for
GC17P067742

No data available for mRNA/cDNA for GC17P067742 Gene

Expression for GC17P067742 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P067742 Gene

Orthologs for GC17P067742 Gene

No data available for Orthologs and Evolution for GC17P067742 Gene

Paralogs for GC17P067742 Gene

No data available for Paralogs for GC17P067742 Gene

Variants for GC17P067742 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P067742 Gene

Disorders for GC17P067742 Gene

No disorders were found for GC17P067742 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P067742 Gene

Publications for GC17P067742 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  3. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for GC17P067742 Gene

Sources for GC17P067742 Gene

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