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Aliases for GC17P066788 Gene

Subcategory (RNA class) for GC17P066788 Gene

miRNA

Quality Score for this RNA gene is

0

Aliases for GC17P066788 Gene

No Aliases found

ORGUL Members for GC17P066788 Gene

No data available for External Ids for GC17P066788 Gene

Summaries for GC17P066788 Gene

GeneCards Summary for GC17P066788 Gene

GC17P066788 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC17P066788 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for GC17P066788

Additional gene information for GC17P066788 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P066788 Gene

Genomics for GC17P066788 Gene

GeneHancer (GH) Regulatory Elements for GC17P066788 Gene

Promoters and enhancers for GC17P066788 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I066776 Enhancer 0.7 ENCODE 0.4 -9.0 -9007 3.1 PKNOX1 USF1 FOXA2 ZBTB6 NFIB ZIC2 TEAD3 GATAD2A SP5 TEAD1 CACNG4 CACNG5 GC17P066788 PIR44901 PRKCA
GH17I066775 Enhancer 0.4 ENCODE 0.4 -11.3 -11333 0.8 NCOA3 NONO ZNF8 NOL11 HELZ CACNG5 GC17P066788 PIR44901 PRKCA
GH17I066747 Enhancer 0.4 ENCODE 0.3 -39.4 -39382 1 FOSL1 POLR2A NFE2 MIR634 CACNG5 PIR44901 GC17P066788 PRKCA
GH17I066728 Enhancer 0.6 ENCODE 0.2 -59.0 -58953 0.2 SMARCA5 CTCF ZNF654 TRIM22 RAD21 ZNF217 ZNF143 SMC3 ZNF444 PIR44901 CACNG5 GC17P066788 PRKCA
GH17I066730 Enhancer 0.6 ENCODE 0.2 -56.4 -56446 1.2 SMARCE1 STAT1 RFX1 DPF2 FOXA1 E2F1 SP1 ZNF217 CTBP1 GATA3 CACNG5 PIR44901 GC17P066788 PRKCA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P066788 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P066788 Gene

Genomic Locations for GC17P066788 Gene
chr17:66,787,071-66,787,168
(GRCh38/hg38)
Size:
98 bases
Orientation:
Plus strand

Genomic View for GC17P066788 Gene

Genes around GC17P066788 on UCSC Golden Path with GeneCards custom track

GC17P066788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P066788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P066788 Gene

ORGUL Member Location for GC17P066788 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P066788 Gene

Proteins for GC17P066788 Gene

Post-translational modifications for GC17P066788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P066788 Gene

Domains & Families for GC17P066788 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P066788 Gene

Function for GC17P066788 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P066788 Gene

Localization for GC17P066788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P066788 Gene

Pathways & Interactions for GC17P066788 Gene

SuperPathways for GC17P066788 Gene

No Data Available

Interacting Proteins for GC17P066788 Gene

Gene Ontology (GO) - Biological Process for GC17P066788 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P066788 Gene

Drugs & Compounds for GC17P066788 Gene

No Compound Related Data Available

Transcripts for GC17P066788 Gene

fRNAdb Secondary structures for GC17P066788 Gene

  • FR188986

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P066788 Gene

No ASD Table

Relevant External Links for GC17P066788 Gene

GeneLoc Exon Structure for
GC17P066788

No data available for mRNA/cDNA for GC17P066788 Gene

Expression for GC17P066788 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P066788 Gene

Orthologs for GC17P066788 Gene

No data available for Orthologs and Evolution for GC17P066788 Gene

Paralogs for GC17P066788 Gene

No data available for Paralogs for GC17P066788 Gene

Variants for GC17P066788 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P066788 Gene

Disorders for GC17P066788 Gene

No disorders were found for GC17P066788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P066788 Gene

Publications for GC17P066788 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins JM … Velculescu VE (Proceedings of the National Academy of Sciences of the United States of America 2006) 1

Products for GC17P066788 Gene

Sources for GC17P066788 Gene

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