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Aliases for GC17P057199 Gene

Subcategory (RNA class) for GC17P057199 Gene

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Quality Score for this RNA gene is

13.4

Aliases for GC17P057199 Gene

No Aliases found

ORGUL Members for GC17P057199 Gene

No data available for External Ids for GC17P057199 Gene

Summaries for GC17P057199 Gene

GeneCards Summary for GC17P057199 Gene

GC17P057199 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC17P057199 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P057199

Additional gene information for GC17P057199 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P057199 Gene

Genomics for GC17P057199 Gene

GeneHancer (GH) Regulatory Elements for GC17P057199 Gene

Promoters and enhancers for GC17P057199 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J057214 Enhancer 1.1 FANTOM5 ENCODE 0.4 +15.8 15808 2.3 PKNOX1 NEUROD1 SIN3A BMI1 ZBTB7B ELK1 ZNF207 FOS ATF7 RCOR1 MSI2 GC17P057199
GH17J057243 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 +43.6 43579 0.6 HDGF ATF1 ARNT ARID4B SIN3A ZNF2 IRF4 ZNF48 NCOA2 SLC30A9 SRSF1 ENSG00000262298 MKS1 MSI2 GC17P057199
GH17J057197 Enhancer 0.4 ENCODE 0.7 -3.5 -3486 0.1 RBAK TRIM28 SRSF1 MSI2 GC17P057199 ENSG00000263089
GH17J057209 Enhancer 0.7 ENCODE 0.4 +11.4 11400 2.8 NCOA3 CTCF FOXA2 RAD21 ZNF7 ZNF157 ZNF600 FOS FOXA3 CEBPB MSI2 GC17P057199
GH17J057105 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.2 -91.2 -91239 6.4 ARID4B YY1 GLIS2 ZNF213 ZNF143 FOS RXRA REST ATF4 GLIS1 AKAP1 ENSG00000264112 RNU7-134P CCDC182 SRSF1 ENSG00000263004 ENSG00000263089 GC17P057199
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P057199 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P057199 Gene

Genomic Locations for GC17P057199 Gene
chr17:57,199,722-57,199,836
(GRCh38/hg38)
Size:
115 bases
Orientation:
Plus strand

Genomic View for GC17P057199 Gene

Genes around GC17P057199 on UCSC Golden Path with GeneCards custom track

GC17P057199 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P057199 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P057199 Gene

ORGUL Member Location for GC17P057199 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P057199 Gene

Proteins for GC17P057199 Gene

Post-translational modifications for GC17P057199 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P057199 Gene

Domains & Families for GC17P057199 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P057199 Gene

Function for GC17P057199 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P057199 Gene

Localization for GC17P057199 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P057199 Gene

Pathways & Interactions for GC17P057199 Gene

SuperPathways for GC17P057199 Gene

No Data Available

Interacting Proteins for GC17P057199 Gene

Gene Ontology (GO) - Biological Process for GC17P057199 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P057199 Gene

Drugs & Compounds for GC17P057199 Gene

No Compound Related Data Available

Transcripts for GC17P057199 Gene

fRNAdb Secondary structures for GC17P057199 Gene

  • FR215300
  • FR138259

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P057199 Gene

No ASD Table

Relevant External Links for GC17P057199 Gene

GeneLoc Exon Structure for
GC17P057199

No data available for mRNA/cDNA for GC17P057199 Gene

Expression for GC17P057199 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P057199 Gene

Orthologs for GC17P057199 Gene

No data available for Orthologs and Evolution for GC17P057199 Gene

Paralogs for GC17P057199 Gene

No data available for Paralogs for GC17P057199 Gene

Variants for GC17P057199 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P057199 Gene

Disorders for GC17P057199 Gene

No disorders were found for GC17P057199 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P057199 Gene

Publications for GC17P057199 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC17P057199 Gene

Sources for GC17P057199 Gene

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