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Aliases for GC17P049596 Gene

Subcategory (RNA class) for GC17P049596 Gene


Quality Score for this RNA gene is


Aliases for GC17P049596 Gene

No Aliases found

ORGUL Members for GC17P049596 Gene

No data available for External Ids for GC17P049596 Gene

Summaries for GC17P049596 Gene

GeneCards Summary for GC17P049596 Gene

GC17P049596 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC17P049596 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P049596

Additional gene information for GC17P049596 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P049596 Gene

Genomics for GC17P049596 Gene

GeneHancer (GH) Regulatory Elements for GC17P049596 Gene

Promoters and enhancers for GC17P049596 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049596 Enhancer 0.9 ENCODE dbSUPER 650.7 +0.3 306 1.2 SOX13 IRF2 FOXA2 ERF ZNF644 DNMT3B GATA3 CREM SOX5 NFIA GC17P049596 NXPH3 LOC100288866 SPOP SLC35B1 PHB ENSG00000250186 RPL21P124 DLX3 ENSG00000248172
GH17J049595 Enhancer 0.7 ENCODE 650.7 -0.8 -785 0.2 SOX13 FOXA2 ZNF644 DNMT3B RARA ZNF7 TEAD3 NR2F6 HOMEZ GATAD2A GC17P049596 PHB ENSG00000250186 RPL21P124 GC17P049591
GH17J049597 Enhancer 0.5 dbSUPER 650.7 +1.9 1863 0.8 NFIL3 HLF CEBPA CEBPB CEBPG GC17P049596 ENSG00000250310 NXPH3 LOC100288866 SPOP SLC35B1 PHB ENSG00000250186 RPL21P124 DLX3
GH17J049674 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.2 +80.3 80328 4.1 MLX DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SPOP UBE2Z ENSG00000262837 SLC35B1 ENSG00000250751 ENSG00000250310 EME1 SNF8 CACNA1G-AS1 COL1A1
GH17J049611 Enhancer 0.9 ENCODE dbSUPER 0.4 +15.1 15065 0.1 SOX13 SAP130 MAX CEBPG ZNF644 RAD21 YY1 TEAD3 HNF4G GATAD2A SPOP NXPH3 LOC100288866 GC17P049596
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P049596 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P049596 Gene

Genomic Locations for GC17P049596 Gene
111 bases
Plus strand

Genomic View for GC17P049596 Gene

Genes around GC17P049596 on UCSC Golden Path with GeneCards custom track

GC17P049596 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P049596 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P049596 Gene

ORGUL Member Location for GC17P049596 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P049596 Gene

Proteins for GC17P049596 Gene

Post-translational modifications for GC17P049596 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P049596 Gene

Domains & Families for GC17P049596 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P049596 Gene

Function for GC17P049596 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P049596 Gene

Localization for GC17P049596 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P049596 Gene

Pathways & Interactions for GC17P049596 Gene

SuperPathways for GC17P049596 Gene

No Data Available

Interacting Proteins for GC17P049596 Gene

Gene Ontology (GO) - Biological Process for GC17P049596 Gene


No data available for Pathways by source and SIGNOR curated interactions for GC17P049596 Gene

Drugs & Compounds for GC17P049596 Gene

No Compound Related Data Available

Transcripts for GC17P049596 Gene

fRNAdb Secondary structures for GC17P049596 Gene

  • FR330209
  • FR214166

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P049596 Gene

No ASD Table

Relevant External Links for GC17P049596 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for GC17P049596 Gene

Expression for GC17P049596 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P049596 Gene

Orthologs for GC17P049596 Gene

No data available for Orthologs and Evolution for GC17P049596 Gene

Paralogs for GC17P049596 Gene

No data available for Paralogs for GC17P049596 Gene

Variants for GC17P049596 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P049596 Gene

Disorders for GC17P049596 Gene

No disorders were found for GC17P049596 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P049596 Gene

Publications for GC17P049596 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC17P049596 Gene

Sources for GC17P049596 Gene

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