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Aliases for GC17P049038 Gene

Subcategory (RNA class) for GC17P049038 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC17P049038 Gene

No Aliases found

ORGUL Members for GC17P049038 Gene

No data available for External Ids for GC17P049038 Gene

Summaries for GC17P049038 Gene

GeneCards Summary for GC17P049038 Gene

GC17P049038 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC17P049038 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC17P049038 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P049038 Gene

Genomics for GC17P049038 Gene

GeneHancer (GH) Regulatory Elements for GC17P049038 Gene

Promoters and enhancers for GC17P049038 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049035 Enhancer 1.1 Ensembl ENCODE dbSUPER 650.7 -0.3 -342 1.4 SIX4 CTCF SIN3A ZBTB7B RAD21 CHAMP1 CC2D1A E2F1 POLR2A SMC3 ENSG00000251550 GC17P049038 RNU6-826P ENSG00000262837 UBE2Z ENSG00000263412 IGF2BP1 ENSG00000255851
GH17J049031 Enhancer 0.9 ENCODE 0.7 -4.1 -4121 1.2 SMAD1 FOXA2 ARNT ARID4B SIN3A ZNF48 ZNF121 GLIS2 ARID2 ZNF207 CALCOCO2 PRAC1 PRAC2 ABI3 GNGT2 ATP5MC1 GC17P049038 ENSG00000255851 IGF2BP1
GH17J049020 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.4 -14356 3.6 ARID4B SIN3A ZSCAN9 RFX5 NCOA2 ETS1 EGR1 SCRT2 RCOR1 HMG20B SNF8 PRAC1 RNU1-42P ENSG00000230532 ENSG00000238804 PRAC2 HOXB9 HOXB-AS4 IGF2BP1 ENSG00000255851
GH17J049025 Enhancer 0.6 dbSUPER 0.4 -9.7 -9703 1.4 PKNOX1 GLI4 ZNF512B ZNF366 BCL11A ZNF239 CEBPA IKZF1 RNU1-42P SNF8 ENSG00000230532 ENSG00000238804 PRAC2 PRAC1 HOXB-AS4 HOXB9 ATP5MC1 ENSG00000255851
GH17J049018 Enhancer 0.5 ENCODE dbSUPER 0.4 -17.6 -17615 1.3 KLF1 ENSG00000255851 ENSG00000238804 PRAC1 PRAC2 GC17P049038 IGF2BP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P049038 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P049038 Gene

Genomic Locations for GC17P049038 Gene
chr17:49,036,351-49,036,455
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC17P049038 Gene

Genes around GC17P049038 on UCSC Golden Path with GeneCards custom track

GC17P049038 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P049038 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P049038 Gene

Proteins for GC17P049038 Gene

Post-translational modifications for GC17P049038 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P049038 Gene

Domains & Families for GC17P049038 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P049038 Gene

Function for GC17P049038 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P049038 Gene

Localization for GC17P049038 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P049038 Gene

Pathways & Interactions for GC17P049038 Gene

SuperPathways for GC17P049038 Gene

No Data Available

Interacting Proteins for GC17P049038 Gene

Gene Ontology (GO) - Biological Process for GC17P049038 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P049038 Gene

Drugs & Compounds for GC17P049038 Gene

No Compound Related Data Available

Transcripts for GC17P049038 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P049038 Gene

No ASD Table

Relevant External Links for GC17P049038 Gene

GeneLoc Exon Structure for
GC17P049038

No data available for mRNA/cDNA for GC17P049038 Gene

Expression for GC17P049038 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P049038 Gene

Orthologs for GC17P049038 Gene

No data available for Orthologs and Evolution for GC17P049038 Gene

Paralogs for GC17P049038 Gene

No data available for Paralogs for GC17P049038 Gene

Variants for GC17P049038 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P049038 Gene

Disorders for GC17P049038 Gene

No disorders were found for GC17P049038 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P049038 Gene

Publications for GC17P049038 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC17P049038 Gene

Sources for GC17P049038 Gene

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