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Aliases for GC17P048882 Gene

Subcategory (RNA class) for GC17P048882 Gene

snoRNA

Quality Score for this RNA gene is

15.2

Aliases for GC17P048882 Gene

No Aliases found

ORGUL Members for GC17P048882 Gene

No data available for External Ids for GC17P048882 Gene

Summaries for GC17P048882 Gene

GeneCards Summary for GC17P048882 Gene

GC17P048882 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC17P048882 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P048882

Additional gene information for GC17P048882 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P048882 Gene

Genomics for GC17P048882 Gene

GeneHancer (GH) Regulatory Elements for GC17P048882 Gene

Promoters and enhancers for GC17P048882 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048879 Enhancer 0.9 ENCODE 650.7 -1.7 -1715 0.2 HDGF PKNOX1 ARNT NEUROD1 SIN3A YBX1 ZNF2 ZBTB7B SLC30A9 GATA2 ENSG00000212565 GC17P048882 ENSG00000248895 ENSG00000266601 CALCOCO2 FLJ45513 LOC105371814 SUMO2P17
GH17J048869 Enhancer 1.2 Ensembl ENCODE 0.4 -9.1 -9133 5.1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 SP5 NFYC MXD4 ATP5MC1 TTLL6 CALCOCO2 UBE2Z ENSG00000230532 HOXB13 PRAC1 PRAC2 SUMO2P17 LOC105371811
GH17J048878 Enhancer 0.6 ENCODE 0.7 -2.5 -2465 0.1 ELF3 CTCF STAT1 ZNF654 RB1 NR2F1 ARID4B REST RAD21 TEAD3 GC17P048882 LOC105371814 SUMO2P17 CALCOCO2
GH17J048830 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.2 -49.4 -49426 2 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B IRF4 YY1 SLC30A9 POLR2B CALCOCO2 TTLL6 ENSG00000263412 FAM117A GC17P048882
GH17J048840 Promoter/Enhancer 1.3 Ensembl ENCODE 0.3 -38.9 -38900 3.9 HDGF BMI1 BATF IRF4 RAD21 ZNF766 ATF7 ETV6 BCLAF1 IKZF2 ATP5MC1 TTLL6 PRAC1 PRAC2 HOXB13 LOC105371811 CALCOCO2 UBE2Z FAM117A GC17P048882
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P048882 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P048882 Gene

Genomic Locations for GC17P048882 Gene
chr17:48,880,839-48,880,967
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand

Genomic View for GC17P048882 Gene

Genes around GC17P048882 on UCSC Golden Path with GeneCards custom track

GC17P048882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P048882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P048882 Gene

ORGUL Member Location for GC17P048882 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P048882 Gene

Proteins for GC17P048882 Gene

Post-translational modifications for GC17P048882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P048882 Gene

Domains & Families for GC17P048882 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P048882 Gene

Function for GC17P048882 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P048882 Gene

Localization for GC17P048882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P048882 Gene

Pathways & Interactions for GC17P048882 Gene

SuperPathways for GC17P048882 Gene

No Data Available

Interacting Proteins for GC17P048882 Gene

Gene Ontology (GO) - Biological Process for GC17P048882 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P048882 Gene

Drugs & Compounds for GC17P048882 Gene

No Compound Related Data Available

Transcripts for GC17P048882 Gene

fRNAdb Secondary structures for GC17P048882 Gene

  • FR307845

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P048882 Gene

No ASD Table

Relevant External Links for GC17P048882 Gene

GeneLoc Exon Structure for
GC17P048882

No data available for mRNA/cDNA for GC17P048882 Gene

Expression for GC17P048882 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P048882 Gene

Orthologs for GC17P048882 Gene

No data available for Orthologs and Evolution for GC17P048882 Gene

Paralogs for GC17P048882 Gene

No data available for Paralogs for GC17P048882 Gene

Variants for GC17P048882 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P048882 Gene

Disorders for GC17P048882 Gene

No disorders were found for GC17P048882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P048882 Gene

Publications for GC17P048882 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  2. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  3. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (PMID: 12007400) Kiss T (Cell 2002) 1
  4. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. (PMID: 9106664) Ganot P … Kiss T (Genes & development 1997) 1

Products for GC17P048882 Gene

Sources for GC17P048882 Gene

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