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Aliases for GC17P048482 Gene

Subcategory (RNA class) for GC17P048482 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC17P048482 Gene

No Aliases found

ORGUL Members for GC17P048482 Gene

No data available for External Ids for GC17P048482 Gene

Summaries for GC17P048482 Gene

GeneCards Summary for GC17P048482 Gene

GC17P048482 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC17P048482 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC17P048482 Gene

Genomics for GC17P048482 Gene

GeneHancer (GH) Regulatory Elements for GC17P048482 Gene

Promoters and enhancers for GC17P048482 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048477 Enhancer 1.2 ENCODE dbSUPER 650.7 -0.6 -631 1.4 HDGF PKNOX1 ATF1 ARNT FEZF1 NCOA2 TCF12 ZNF766 GATA2 ZNF207 ENSG00000206805 GC17P048482 SKAP1 HOXB2 HOXB-AS1 HOXB-AS3 HOXB1 SP2 SNX11 ENSG00000266601
GH17J048471 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -6.4 -6414 1.7 HDGF KLF17 FEZF1 SCRT2 FOS IKZF2 ZBTB11 SP1 ZNF341 IKZF1 SKAP1 HOXB-AS2 HOXB3 HOXB4 MIR10A HOXB-AS1 HOXB2 HOXB1 MIR196A1 CDK5RAP3
GH17J048457 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -21.8 -21795 0.6 PKNOX1 RB1 SIN3A ZNF2 IRF4 ZNF48 RAD21 ZEB1 ZNF143 ATF7 COPZ2 SCRN2 LOC101927166 GC17P048482
GH17J048470 Enhancer 0.9 ENCODE dbSUPER 0.4 -8.3 -8322 1 CTCF FOSL1 ZNF366 EED ZSCAN5C FOS IKZF2 ZNF189 ZBTB8A ZSCAN21 SKAP1 HOXB-AS2 HOXB3 HOXB4 MIR10A HOXB2 HOXB-AS1 HOXB1 MIR196A1 GC17P048482
GH17J048452 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -25.2 -25224 1.8 GATA3 ZNF266 ETV6 IKZF2 RUNX3 ZBTB17 SKAP1 SP2 MRPL45P2 ENSG00000264701 UBE2Z ENSG00000266601 CDK5RAP3 HOXB2 LOC101927166 GC17P048482
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P048482 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P048482 Gene

Genomic Locations for GC17P048482 Gene
chr17:48,479,096-48,479,196
(GRCh38/hg38)
Size:
101 bases
Orientation:
Plus strand
chr17:48,459,156-48,459,186
(GRCh37/hg19)
Size:
31 bases
Orientation:
Plus strand

Genomic View for GC17P048482 Gene

Genes around GC17P048482 on UCSC Golden Path with GeneCards custom track

GC17P048482 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P048482 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P048482 Gene

Proteins for GC17P048482 Gene

Post-translational modifications for GC17P048482 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P048482 Gene

Domains & Families for GC17P048482 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P048482 Gene

Function for GC17P048482 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P048482 Gene

Localization for GC17P048482 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P048482 Gene

Pathways & Interactions for GC17P048482 Gene

SuperPathways for GC17P048482 Gene

No Data Available

Interacting Proteins for GC17P048482 Gene

Gene Ontology (GO) - Biological Process for GC17P048482 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P048482 Gene

Drugs & Compounds for GC17P048482 Gene

No Compound Related Data Available

Transcripts for GC17P048482 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P048482 Gene

No ASD Table

Relevant External Links for GC17P048482 Gene

GeneLoc Exon Structure for
GC17P048482

No data available for mRNA/cDNA for GC17P048482 Gene

Expression for GC17P048482 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P048482 Gene

Orthologs for GC17P048482 Gene

No data available for Orthologs and Evolution for GC17P048482 Gene

Paralogs for GC17P048482 Gene

No data available for Paralogs for GC17P048482 Gene

Variants for GC17P048482 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P048482 Gene

Disorders for GC17P048482 Gene

No disorders were found for GC17P048482 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P048482 Gene

Publications for GC17P048482 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

Products for GC17P048482 Gene

Sources for GC17P048482 Gene

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