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Aliases for GC17P048037 Gene

Subcategory (RNA class) for GC17P048037 Gene

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Quality Score for this RNA gene is

0.4

Aliases for GC17P048037 Gene

No Aliases found

ORGUL Members for GC17P048037 Gene

No data available for External Ids for GC17P048037 Gene

Summaries for GC17P048037 Gene

GeneCards Summary for GC17P048037 Gene

GC17P048037 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC17P048037 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC17P048037

Additional gene information for GC17P048037 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P048037 Gene

Genomics for GC17P048037 Gene

GeneHancer (GH) Regulatory Elements for GC17P048037 Gene

Promoters and enhancers for GC17P048037 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048036 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.8 +0.5 491 1.8 HDGF PKNOX1 ARID4B SIN3A BMI1 THRB ZNF48 RAD21 ELK1 ZNF207 COPZ2 GC17P048037 MIR152 ENSG00000263412 PRR15L SNX11 SCRN2 TBX21
GH17I048023 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -11.8 -11767 4.6 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 SP2 ENSG00000253347 CBX1 MRPL45P2 EFCAB13 ENSG00000266601 SNX11 CDK5RAP3 COPZ2 SKAP1
GH17I048011 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -23.7 -23659 4.3 HDGF PKNOX1 CLOCK ARNT SIN3A ZNF2 ZBTB7B E2F8 ZNF207 ZNF143 SP2 MRPL45P2 SCRN2 PRR15L ENSG00000264701 UBE2Z EFCAB13 RPS2P47 COPZ2 CDK5RAP3
GH17I048001 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -33.7 -33689 4.4 HDGF ARNT ZNF133 SIN3A YBX1 ZBTB7B IRF4 YY1 ZNF121 ZNF766 PRR15L CALCOCO2 SP2 PNPO SP2-AS1 HOXB4 ENSG00000266601 NFE2L1 SNX11 CBX1
GH17I048018 Enhancer 1 Ensembl ENCODE 0.4 -18.7 -18689 0.4 HDGF RB1 ARID4B SIN3A ZNF2 DNMT3B ZNF48 ZSCAN9 RAD21 ARID2 NFE2L1 CBX1 SNX11 GC17P048037 ENSG00000264701
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P048037 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P048037 Gene

Genomic Locations for GC17P048037 Gene
chr17:48,037,090-48,037,252
(GRCh38/hg38)
Size:
163 bases
Orientation:
Plus strand

Genomic View for GC17P048037 Gene

Genes around GC17P048037 on UCSC Golden Path with GeneCards custom track

GC17P048037 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P048037 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC17P048037 Gene

ORGUL Member Location for GC17P048037 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P048037 Gene

Proteins for GC17P048037 Gene

Post-translational modifications for GC17P048037 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P048037 Gene

Domains & Families for GC17P048037 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P048037 Gene

Function for GC17P048037 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P048037 Gene

Localization for GC17P048037 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P048037 Gene

Pathways & Interactions for GC17P048037 Gene

SuperPathways for GC17P048037 Gene

No Data Available

Interacting Proteins for GC17P048037 Gene

Gene Ontology (GO) - Biological Process for GC17P048037 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P048037 Gene

Drugs & Compounds for GC17P048037 Gene

No Compound Related Data Available

Transcripts for GC17P048037 Gene

fRNAdb Secondary structures for GC17P048037 Gene

  • FR378099

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P048037 Gene

No ASD Table

Relevant External Links for GC17P048037 Gene

GeneLoc Exon Structure for
GC17P048037

No data available for mRNA/cDNA for GC17P048037 Gene

Expression for GC17P048037 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P048037 Gene

Orthologs for GC17P048037 Gene

No data available for Orthologs and Evolution for GC17P048037 Gene

Paralogs for GC17P048037 Gene

No data available for Paralogs for GC17P048037 Gene

Variants for GC17P048037 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P048037 Gene

Disorders for GC17P048037 Gene

No disorders were found for GC17P048037 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P048037 Gene

Publications for GC17P048037 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC17P048037 Gene

Sources for GC17P048037 Gene

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