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Aliases for GC17P043554 Gene

Subcategory (RNA class) for GC17P043554 Gene

snRNA

Quality Score for this RNA gene is

2

Aliases for GC17P043554 Gene

No Aliases found

ORGUL Members for GC17P043554 Gene

No data available for External Ids for GC17P043554 Gene

Summaries for GC17P043554 Gene

GeneCards Summary for GC17P043554 Gene

GC17P043554 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC17P043554 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC17P043554 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17P043554 Gene

Genomics for GC17P043554 Gene

GeneHancer (GH) Regulatory Elements for GC17P043554 Gene

Promoters and enhancers for GC17P043554 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I043467 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.8 -4.6 -4623 2.9 FOXA2 MLX ARID4B DMAP1 ZNF48 SLC30A9 FOS SP5 MIER2 PPARG ETV4 RPL27 GC17P043554 GC17P043560
GH17I043465 Enhancer 0.9 ENCODE 0.4 -7.3 -7344 0.9 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF121 RXRA SP5 GC17P043560 ASB16-AS1 RNU6-1137P ARL4D RNU6-406P MIR2117 MIR2117HG ETV4 GC17P043554
GH17I043470 Enhancer 0.4 dbSUPER 0.8 -2.0 -2043 1.3 ZNF600 PRDM10 SP7 ETV4 GC17P043554 GC17P043560
GH17I043466 Enhancer 0.2 ENCODE 0.4 -6.4 -6421 0.4 GC17P043560 GC17P043554
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17P043554 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17P043554 Gene

Genomic Locations for GC17P043554 Gene
chr17:43,473,584-43,473,690
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand

Genomic View for GC17P043554 Gene

Genes around GC17P043554 on UCSC Golden Path with GeneCards custom track

GC17P043554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17P043554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17P043554 Gene

Proteins for GC17P043554 Gene

Post-translational modifications for GC17P043554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17P043554 Gene

Domains & Families for GC17P043554 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17P043554 Gene

Function for GC17P043554 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17P043554 Gene

Localization for GC17P043554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17P043554 Gene

Pathways & Interactions for GC17P043554 Gene

SuperPathways for GC17P043554 Gene

No Data Available

Interacting Proteins for GC17P043554 Gene

Gene Ontology (GO) - Biological Process for GC17P043554 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17P043554 Gene

Drugs & Compounds for GC17P043554 Gene

No Compound Related Data Available

Transcripts for GC17P043554 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC17P043554 Gene

No ASD Table

Relevant External Links for GC17P043554 Gene

GeneLoc Exon Structure for
GC17P043554

No data available for mRNA/cDNA for GC17P043554 Gene

Expression for GC17P043554 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17P043554 Gene

Orthologs for GC17P043554 Gene

No data available for Orthologs and Evolution for GC17P043554 Gene

Paralogs for GC17P043554 Gene

No data available for Paralogs for GC17P043554 Gene

Variants for GC17P043554 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17P043554 Gene

Disorders for GC17P043554 Gene

No disorders were found for GC17P043554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17P043554 Gene

Publications for GC17P043554 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC17P043554 Gene

Sources for GC17P043554 Gene

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