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Aliases for GC17M007005 Gene

Subcategory (RNA class) for GC17M007005 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for GC17M007005 Gene

No Aliases found

ORGUL Members for GC17M007005 Gene

No data available for External Ids for GC17M007005 Gene

Summaries for GC17M007005 Gene

GeneCards Summary for GC17M007005 Gene

GC17M007005 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC17M007005 Gene

  • group_I_intron: Group I catalytic introns are large self-splicing ribozymes. They catalyse their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions.

Additional gene information for GC17M007005 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17M007005 Gene

Genomics for GC17M007005 Gene

GeneHancer (GH) Regulatory Elements for GC17M007005 Gene

Promoters and enhancers for GC17M007005 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I007004 Enhancer 0.7 ENCODE 550.8 -0.6 -617 0.2 HDGF CTCF SIN3A FEZF1 ZNF2 RAD21 ZNF335 CTBP1 ZNF207 SMC3 GC17M007005 ALOX12-AS1 ALOX12 ENSG00000267047
GH17I006993 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.4 +9.1 9107 3.8 HDGF PKNOX1 ATF1 ARNT SIN3A NCOA2 TCF12 NCOA1 ZNF592 SNIP1 ENSG00000262089 ALOX12 CNTROB POLR2A WRAP53 DVL2 ALOX12-AS1 KDM6B SNORD10 C17orf49
GH17I007001 Enhancer 0.7 ENCODE 0.8 +2.6 2553 0.2 CTCF RB1 BHLHE40 DACH1 MAFG MNT REST ZEB2 RAD21 CC2D1A ENSG00000262089 GC17M007005 ALOX12 ALOX12-AS1 ENSG00000267047
GH17I006998 Enhancer 0.8 ENCODE 0.4 +5.3 5299 0.9 HDAC1 PKNOX1 TCF12 ZNF766 FOS ATF7 CREM NCOA1 ZEB2 ZNF592 ENSG00000262089 ALOX12 GC17M007005 ALOX12-AS1 ENSG00000267047
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17M007005 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17M007005 Gene

Genomic Locations for GC17M007005 Gene
chr17:7,004,106-7,004,350
(GRCh38/hg38)
Size:
245 bases
Orientation:
Minus strand

Genomic View for GC17M007005 Gene

Genes around GC17M007005 on UCSC Golden Path with GeneCards custom track

GC17M007005 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17M007005 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17M007005 Gene

Proteins for GC17M007005 Gene

Post-translational modifications for GC17M007005 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17M007005 Gene

Domains & Families for GC17M007005 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17M007005 Gene

Function for GC17M007005 Gene

Phenotypes From GWAS Catalog for GC17M007005 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17M007005 Gene

Localization for GC17M007005 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17M007005 Gene

Pathways & Interactions for GC17M007005 Gene

SuperPathways for GC17M007005 Gene

No Data Available

Interacting Proteins for GC17M007005 Gene

Gene Ontology (GO) - Biological Process for GC17M007005 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17M007005 Gene

Drugs & Compounds for GC17M007005 Gene

No Compound Related Data Available

Transcripts for GC17M007005 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC17M007005 Gene

No ASD Table

Relevant External Links for GC17M007005 Gene

GeneLoc Exon Structure for
GC17M007005

No data available for mRNA/cDNA for GC17M007005 Gene

Expression for GC17M007005 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17M007005 Gene

Orthologs for GC17M007005 Gene

No data available for Orthologs and Evolution for GC17M007005 Gene

Paralogs for GC17M007005 Gene

No data available for Paralogs for GC17M007005 Gene

Variants for GC17M007005 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17M007005 Gene

Disorders for GC17M007005 Gene

No disorders were found for GC17M007005 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17M007005 Gene

Publications for GC17M007005 Gene

  1. Crystal structure of a group I ribozyme domain: principles of RNA packing. (PMID: 8781224) Cate JH … Doudna JA (Science (New York, N.Y.) 1996) 1
  2. Self-splicing of group I introns. (PMID: 2197983) Cech TR (Annual review of biochemistry 1990) 1

Products for GC17M007005 Gene

Sources for GC17M007005 Gene

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