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Aliases for GC17M006601 Gene

Subcategory (RNA class) for GC17M006601 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC17M006601 Gene

No Aliases found

ORGUL Members for GC17M006601 Gene

No data available for External Ids for GC17M006601 Gene

Summaries for GC17M006601 Gene

GeneCards Summary for GC17M006601 Gene

GC17M006601 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC17M006601 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC17M006601 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17M006601 Gene

Genomics for GC17M006601 Gene

GeneHancer (GH) Regulatory Elements for GC17M006601 Gene

Promoters and enhancers for GC17M006601 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J006599 Enhancer 0.8 Ensembl ENCODE 650.7 +1.4 1430 1.2 L3MBTL2 MAX MAFG MNT ZNF316 FOXK2 SMARCA4 IKZF1 NFE2 EMSY GC17M006601 RNA5SP435 KIAA0753 PITPNM3 TXNDC17 C17orf100 MED31 SLC13A5 GC17M006460
GH17J006574 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.4 25408 1.8 HDGF HDAC1 ARNT NFRKB STAT5A EGR1 ETV6 ATF7 IKZF2 RUNX3 KIAA0753 ENSG00000261996 GC17M006460 GC17M006601 RNA5SP435
GH17J006591 Enhancer 0.6 ENCODE 0.4 +9.1 9111 1.6 SOX5 SOX13 GATAD2A TEAD1 SIN3A ELF1 REST SP1 HNF1A ATF3 ENSG00000261996 GC17M006601 RNA5SP435 GC17M006460 KIAA0753
GH17J006578 Enhancer 0.6 ENCODE 0.3 +22.4 22409 1.1 BCOR ZMYM3 ELF1 ZNF664 ADNP RCOR1 FOSL2 KDM1A KIAA0753 ENSG00000261996 GC17M006460 RNA5SP435 GC17M006601
GH17J006611 Enhancer 0.3 ENCODE 0.4 -10.7 -10665 0.8 ZNF121 KIAA0753 ENSG00000261996 PITPNM3 MED31 C17orf100 GC17M006601 RNA5SP435 PIR46953
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17M006601 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17M006601 Gene

Genomic Locations for GC17M006601 Gene
chr17:6,600,943-6,601,051
(GRCh38/hg38)
Size:
109 bases
Orientation:
Minus strand

Genomic View for GC17M006601 Gene

Genes around GC17M006601 on UCSC Golden Path with GeneCards custom track

GC17M006601 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17M006601 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17M006601 Gene

Proteins for GC17M006601 Gene

Post-translational modifications for GC17M006601 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17M006601 Gene

Domains & Families for GC17M006601 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17M006601 Gene

Function for GC17M006601 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17M006601 Gene

Localization for GC17M006601 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17M006601 Gene

Pathways & Interactions for GC17M006601 Gene

SuperPathways for GC17M006601 Gene

No Data Available

Interacting Proteins for GC17M006601 Gene

Gene Ontology (GO) - Biological Process for GC17M006601 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17M006601 Gene

Drugs & Compounds for GC17M006601 Gene

No Compound Related Data Available

Transcripts for GC17M006601 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17M006601 Gene

No ASD Table

Relevant External Links for GC17M006601 Gene

GeneLoc Exon Structure for
GC17M006601

No data available for mRNA/cDNA for GC17M006601 Gene

Expression for GC17M006601 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17M006601 Gene

Orthologs for GC17M006601 Gene

No data available for Orthologs and Evolution for GC17M006601 Gene

Paralogs for GC17M006601 Gene

No data available for Paralogs for GC17M006601 Gene

Variants for GC17M006601 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17M006601 Gene

Disorders for GC17M006601 Gene

No disorders were found for GC17M006601 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17M006601 Gene

Publications for GC17M006601 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

Products for GC17M006601 Gene

Sources for GC17M006601 Gene

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