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Aliases for GC17M005386 Gene

Subcategory (RNA class) for GC17M005386 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for GC17M005386 Gene

No Aliases found

ORGUL Members for GC17M005386 Gene

No data available for External Ids for GC17M005386 Gene

Summaries for GC17M005386 Gene

GeneCards Summary for GC17M005386 Gene

GC17M005386 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC17M005386 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

Additional gene information for GC17M005386 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC17M005386 Gene

Genomics for GC17M005386 Gene

GeneHancer (GH) Regulatory Elements for GC17M005386 Gene

Promoters and enhancers for GC17M005386 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J005610 Enhancer 0.2 Ensembl 650.7 -0.4 -430 0.8 GC17M005386 NLRP1
GH17J005582 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.3 +26.3 26296 4.4 HDGF BATF ZNF143 RCOR1 ATF7 IKZF2 RUNX3 CREM SMARCC1 CEBPB NLRP1 RPAIN GC17M005386 LOC105371507
GH17J005525 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.2 +83.7 83711 3.2 PKNOX1 ATF1 TAF9B INSM2 KLF17 FEZF1 GLI4 RFX5 ZNF335 ZNF366 NLRP1 RPAIN MIS12 DERL2 DHX33 LOC105371507 RNU7-31P GC17M005386
GH17J005416 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.1 +191.8 191807 4.7 HDGF PKNOX1 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B IRF4 YY1 RPAIN NUP88 RABEP1 ENSG00000263272 C1QBP DHX33 LOC101927979 DERL2 GC17P005414 GC17M005386
GH17J005515 Enhancer 1.1 Ensembl ENCODE 0.2 +94.2 94202 3.3 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 GLIS2 ATF7 FOS DERL2 MIS12 RPAIN NLRP1 RNU7-31P LOC105371507 GC17M005386
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC17M005386 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC17M005386 Gene

Genomic Locations for GC17M005386 Gene
chr17:5,386,458-5,610,758
(GRCh38/hg38)
Size:
224,301 bases
Orientation:
Minus strand

Genomic View for GC17M005386 Gene

Genes around GC17M005386 on UCSC Golden Path with GeneCards custom track

GC17M005386 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC17M005386 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC17M005386 Gene

Proteins for GC17M005386 Gene

Post-translational modifications for GC17M005386 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC17M005386 Gene

Domains & Families for GC17M005386 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC17M005386 Gene

Function for GC17M005386 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC17M005386 Gene

Localization for GC17M005386 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC17M005386 Gene

Pathways & Interactions for GC17M005386 Gene

SuperPathways for GC17M005386 Gene

No Data Available

Interacting Proteins for GC17M005386 Gene

Gene Ontology (GO) - Biological Process for GC17M005386 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC17M005386 Gene

Drugs & Compounds for GC17M005386 Gene

No Compound Related Data Available

Transcripts for GC17M005386 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC17M005386 Gene

No ASD Table

Relevant External Links for GC17M005386 Gene

GeneLoc Exon Structure for
GC17M005386

No data available for mRNA/cDNA for GC17M005386 Gene

Expression for GC17M005386 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC17M005386 Gene

Orthologs for GC17M005386 Gene

No data available for Orthologs and Evolution for GC17M005386 Gene

Paralogs for GC17M005386 Gene

No data available for Paralogs for GC17M005386 Gene

Variants for GC17M005386 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC17M005386 Gene

Disorders for GC17M005386 Gene

No disorders were found for GC17M005386 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC17M005386 Gene

Publications for GC17M005386 Gene

  1. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC17M005386 Gene

Sources for GC17M005386 Gene

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