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Aliases for GC16P021642 Gene

Subcategory (RNA class) for GC16P021642 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC16P021642 Gene

No Aliases found

ORGUL Members for GC16P021642 Gene

No data available for External Ids for GC16P021642 Gene

Summaries for GC16P021642 Gene

GeneCards Summary for GC16P021642 Gene

GC16P021642 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC16P021642 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC16P021642 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC16P021642 Gene

Genomics for GC16P021642 Gene

GeneHancer (GH) Regulatory Elements for GC16P021642 Gene

Promoters and enhancers for GC16P021642 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J021643 Promoter/Enhancer 0.7 Ensembl dbSUPER 600.7 +1.2 1248 0.2 GC16P021642 GC16P021643 RNU6-1005P RNU6-196P IGSF6 GC16P021651 METTL9
GH16J021637 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.7 -2652 4 ZNF652 ELF3 CTCF CEBPG RERE ZNF384 TFE3 PPARG HNF1A SP5 METTL9 ENSG00000260905 IGSF6 ENSG00000260973 CRYM GC16P021642 ENSG00000261596
GH16J021624 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.5 -14532 6.3 ELF3 CEBPG RERE MAFK TFE3 SP7 HNF1A SP5 ZNF644 KAT8 ENSG00000261596 METTL9 IGSF6 MOSMO ERI2 ENSG00000260905 ENSG00000260973 CRYM GC16P021642
GH16J021635 Enhancer 0.9 ENCODE dbSUPER 0.4 -7.5 -7538 0.2 ZNF652 AHR KAT8 RXRA GATAD2A NFKBIZ KAT7 ZBTB26 SAP130 DRAP1 METTL9 ENSG00000261596 GC16P021642
GH16J021631 Enhancer 0.7 ENCODE 0.4 -10.2 -10226 1.6 IKZF1 RXRA CEBPA GATAD2A ZNF776 IKZF2 FOXK2 DPF2 CUX1 HNF4A METTL9 NPIPB3 NPIPB5 ENSG00000260306 NPIPB4 MFSD13B ENSG00000260905 IGSF6 ERI2 ENSG00000261596
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC16P021642 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC16P021642 Gene

Genomic Locations for GC16P021642 Gene
chr16:21,642,053-21,642,160
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC16P021642 Gene

Genes around GC16P021642 on UCSC Golden Path with GeneCards custom track

GC16P021642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC16P021642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC16P021642 Gene

Proteins for GC16P021642 Gene

Post-translational modifications for GC16P021642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC16P021642 Gene

Domains & Families for GC16P021642 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC16P021642 Gene

Function for GC16P021642 Gene

Phenotypes From GWAS Catalog for GC16P021642 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC16P021642 Gene

Localization for GC16P021642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC16P021642 Gene

Pathways & Interactions for GC16P021642 Gene

PathCards logo

SuperPathways for GC16P021642 Gene

No Data Available

Interacting Proteins for GC16P021642 Gene

Gene Ontology (GO) - Biological Process for GC16P021642 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC16P021642 Gene

Drugs & Compounds for GC16P021642 Gene

No Compound Related Data Available

Transcripts for GC16P021642 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC16P021642 Gene

No ASD Table

Relevant External Links for GC16P021642 Gene

GeneLoc Exon Structure for
GC16P021642

No data available for mRNA/cDNA for GC16P021642 Gene

Expression for GC16P021642 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC16P021642 Gene

Orthologs for GC16P021642 Gene

No data available for Orthologs and Evolution for GC16P021642 Gene

Paralogs for GC16P021642 Gene

No data available for Paralogs for GC16P021642 Gene

Variants for GC16P021642 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC16P021642 Gene

Disorders for GC16P021642 Gene

No disorders were found for GC16P021642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC16P021642 Gene

Publications for GC16P021642 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC16P021642 Gene

Products for GC16P021642 Gene

Sources for GC16P021642 Gene

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