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Aliases for GC16P002400 Gene

Subcategory (RNA class) for GC16P002400 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC16P002400 Gene

No Aliases found

ORGUL Members for GC16P002400 Gene

No data available for External Ids for GC16P002400 Gene

Summaries for GC16P002400 Gene

GeneCards Summary for GC16P002400 Gene

GC16P002400 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC16P002400 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC16P002400

Additional gene information for GC16P002400 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC16P002400 Gene

Genomics for GC16P002400 Gene

GeneHancer (GH) Regulatory Elements for GC16P002400 Gene

Promoters and enhancers for GC16P002400 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J002388 Enhancer 0.8 ENCODE 0.4 -11.6 -11639 0.2 CBFA2T2 RERE SP5 ZNF644 SOX13 RXRB FOXA2 IRF2 FOXK2 TCF7 IFT140 ABCA17P ABCA3 CCNF TIGD7 MTCO1P28 ERVK13-1 GC16P002400 GC16M002369
GH16J002404 Enhancer 0.5 Ensembl 0.7 +3.6 3607 0.6 TRIM24 PKNOX1 NFRKB NR2C2 CEBPG GC16P002407 ENSG00000215154 GC16P002400 ABCA17P
GH16J002386 Enhancer 0.7 Ensembl ENCODE 0.4 -14.0 -13993 2.6 CTCF ZNF335 FOS RAD21 NANOG BACH1 POU5F1 ABCA17P ABCA3 CCNF TBC1D24 ERVK13-1 GC16P002400 GC16M002369
GH16J002372 Enhancer 0.6 Ensembl ENCODE 0.3 -27.6 -27567 1.6 KLF4 BATF ZBTB40 ABCA17P ABCA3 CCNF GC16M002369 GC16P002400
GH16J002383 Enhancer 0.5 Ensembl 0.4 -16.4 -16393 1.4 IRF2 GATA3 IKZF1 SMARCE1 CCNF ABCA3 ABCA17P ERVK13-1 ENSG00000261613 GC16M002369 GC16P002400
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC16P002400 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC16P002400 Gene

Genomic Locations for GC16P002400 Gene
chr16:2,400,694-2,400,725
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand

Genomic View for GC16P002400 Gene

Genes around GC16P002400 on UCSC Golden Path with GeneCards custom track

GC16P002400 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC16P002400 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC16P002400 Gene

ORGUL Member Location for GC16P002400 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC16P002400 Gene

Proteins for GC16P002400 Gene

Post-translational modifications for GC16P002400 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC16P002400 Gene

Domains & Families for GC16P002400 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC16P002400 Gene

Function for GC16P002400 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC16P002400 Gene

Localization for GC16P002400 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC16P002400 Gene

Pathways & Interactions for GC16P002400 Gene

PathCards logo

SuperPathways for GC16P002400 Gene

No Data Available

Interacting Proteins for GC16P002400 Gene

Gene Ontology (GO) - Biological Process for GC16P002400 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC16P002400 Gene

Drugs & Compounds for GC16P002400 Gene

No Compound Related Data Available

Transcripts for GC16P002400 Gene

fRNAdb Secondary structures for GC16P002400 Gene

  • FR323790
  • FR345108

Alternative Splicing Database (ASD) splice patterns (SP) for GC16P002400 Gene

No ASD Table

Relevant External Links for GC16P002400 Gene

GeneLoc Exon Structure for
GC16P002400

No data available for mRNA/cDNA for GC16P002400 Gene

Expression for GC16P002400 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC16P002400 Gene

Orthologs for GC16P002400 Gene

No data available for Orthologs and Evolution for GC16P002400 Gene

Paralogs for GC16P002400 Gene

No data available for Paralogs for GC16P002400 Gene

Variants for GC16P002400 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC16P002400 Gene

Disorders for GC16P002400 Gene

No disorders were found for GC16P002400 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC16P002400 Gene

Publications for GC16P002400 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC16P002400 Gene

Products for GC16P002400 Gene

Sources for GC16P002400 Gene

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