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Aliases for GC16P001995 Gene

Subcategory (RNA class) for GC16P001995 Gene

snoRNA

Quality Score for this RNA gene is

15.2

Aliases for GC16P001995 Gene

No Aliases found

ORGUL Members for GC16P001995 Gene

No data available for External Ids for GC16P001995 Gene

Summaries for GC16P001995 Gene

GeneCards Summary for GC16P001995 Gene

GC16P001995 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC16P001995 Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC16P001995

Additional gene information for GC16P001995 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC16P001995 Gene

Genomics for GC16P001995 Gene

GeneHancer (GH) Regulatory Elements for GC16P001995 Gene

Promoters and enhancers for GC16P001995 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J001962 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 -0.8 -789 4.4 HDGF MTA3 SP1 ZFX ELF3 NKRF POLR2A MLLT1 ZNF121 GTF2F1 ENSG00000255513 SNHG9 SNORA64 RPS2 GC16M001962 GC16M001963 GC16M001965 GC16M001966 GC16P001995 GC16P002343
GH16J001966 Promoter 0.6 EPDnew 600.7 +1.7 1657 0.1 ZNF121 GC16P001995 RNF151 RPS2 SNHG9 SNORA78 SYNGR3 ENSG00000277602
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC16P001995 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC16P001995 Gene

Genomic Locations for GC16P001995 Gene
chr16:1,965,180-1,965,310
(GRCh38/hg38)
Size:
131 bases
Orientation:
Plus strand

Genomic View for GC16P001995 Gene

Genes around GC16P001995 on UCSC Golden Path with GeneCards custom track

GC16P001995 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC16P001995 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC16P001995 Gene

ORGUL Member Location for GC16P001995 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC16P001995 Gene

Proteins for GC16P001995 Gene

Post-translational modifications for GC16P001995 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC16P001995 Gene

Domains & Families for GC16P001995 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC16P001995 Gene

Function for GC16P001995 Gene

Phenotypes From GWAS Catalog for GC16P001995 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC16P001995 Gene

Localization for GC16P001995 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC16P001995 Gene

Pathways & Interactions for GC16P001995 Gene

PathCards logo

SuperPathways for GC16P001995 Gene

No Data Available

Interacting Proteins for GC16P001995 Gene

Gene Ontology (GO) - Biological Process for GC16P001995 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC16P001995 Gene

Drugs & Compounds for GC16P001995 Gene

No Compound Related Data Available

Transcripts for GC16P001995 Gene

fRNAdb Secondary structures for GC16P001995 Gene

  • FR085060
  • FR380989

Alternative Splicing Database (ASD) splice patterns (SP) for GC16P001995 Gene

No ASD Table

Relevant External Links for GC16P001995 Gene

GeneLoc Exon Structure for
GC16P001995

No data available for mRNA/cDNA for GC16P001995 Gene

Expression for GC16P001995 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC16P001995 Gene

Orthologs for GC16P001995 Gene

No data available for Orthologs and Evolution for GC16P001995 Gene

Paralogs for GC16P001995 Gene

No data available for Paralogs for GC16P001995 Gene

Variants for GC16P001995 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC16P001995 Gene

Disorders for GC16P001995 Gene

No disorders were found for GC16P001995 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC16P001995 Gene

Publications for GC16P001995 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

No data available for External Links for GC16P001995 Gene

Products for GC16P001995 Gene

Sources for GC16P001995 Gene

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