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Aliases for GC16M004952 Gene

Subcategory (RNA class) for GC16M004952 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC16M004952 Gene

No Aliases found

ORGUL Members for GC16M004952 Gene

No data available for External Ids for GC16M004952 Gene

Summaries for GC16M004952 Gene

GeneCards Summary for GC16M004952 Gene

GC16M004952 is an RNA Gene, and is affiliated with the Y RNA class.

fRNAdb sequence ontologies for GC16M004952 Gene

  • Y RNA: Y RNAs are components of the Ro ribonucleoprotein particle (Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs -- hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. This family includes a significant number of annotated pseudogenes and the model is expected to discriminate poorly between real and Y RNA related pseudogenes.

View fRNAdb secondary structures for GC16M004952

Additional gene information for GC16M004952 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC16M004952 Gene

Genomics for GC16M004952 Gene

GeneHancer (GH) Regulatory Elements for GC16M004952 Gene

Promoters and enhancers for GC16M004952 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J004949 Enhancer 0.4 Ensembl 600.7 +1.6 1604 0.6 NRF1 ZNF362 GC16M004952 ENSG00000263105 PPL GC16P004899
GH16J004956 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -5.6 -5608 2.6 SP1 ZNF652 ELF3 CC2D1A CTCF MNT POLR2A CEBPG GTF2F1 AHR SEC14L5 SEPTIN12 PPL GC16M004952
GH16J004934 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.4 +15.3 15294 3.3 CTCF MNT CEBPG RERE AHR NCOA6 ZBTB7A POLR2A SP1 PPARG PPL SEC14L5 SEPTIN12 ENSG00000267077 GC16M004952 GC16P004899
GH16J004947 Enhancer 1.1 ENCODE dbSUPER 0.7 +3.8 3762 1.2 SP1 ELF3 ZKSCAN8 TFE3 ZNF644 MZF1 KAT8 HMG20B ZIC2 GATAD2A SEPTIN12 GC16M004952 PPL GC16P004899
GH16J004942 Enhancer 1.6 FANTOM5 ENCODE dbSUPER 0.4 +7.5 7518 4.4 ZNF652 SP1 ELF3 MNT ZNF121 CEBPG RERE NFIB ZSCAN21 AHR ZNF500 ANKS3 GLYR1 SEPTIN12 SEC14L5 MGRN1 PPL GC16M004952 GC16P004899
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC16M004952 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC16M004952 Gene

Genomic Locations for GC16M004952 Gene
chr16:4,951,772-4,951,891
(GRCh38/hg38)
Size:
120 bases
Orientation:
Minus strand

Genomic View for GC16M004952 Gene

Genes around GC16M004952 on UCSC Golden Path with GeneCards custom track

GC16M004952 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC16M004952 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC16M004952 Gene

ORGUL Member Location for GC16M004952 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC16M004952 Gene

Proteins for GC16M004952 Gene

Post-translational modifications for GC16M004952 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC16M004952 Gene

Domains & Families for GC16M004952 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC16M004952 Gene

Function for GC16M004952 Gene

Phenotypes From GWAS Catalog for GC16M004952 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC16M004952 Gene

Localization for GC16M004952 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC16M004952 Gene

Pathways & Interactions for GC16M004952 Gene

PathCards logo

SuperPathways for GC16M004952 Gene

No Data Available

Interacting Proteins for GC16M004952 Gene

Gene Ontology (GO) - Biological Process for GC16M004952 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC16M004952 Gene

Drugs & Compounds for GC16M004952 Gene

No Compound Related Data Available

Transcripts for GC16M004952 Gene

fRNAdb Secondary structures for GC16M004952 Gene

  • FR195372

Alternative Splicing Database (ASD) splice patterns (SP) for GC16M004952 Gene

No ASD Table

Relevant External Links for GC16M004952 Gene

GeneLoc Exon Structure for
GC16M004952

No data available for mRNA/cDNA for GC16M004952 Gene

Expression for GC16M004952 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC16M004952 Gene

Orthologs for GC16M004952 Gene

No data available for Orthologs and Evolution for GC16M004952 Gene

Paralogs for GC16M004952 Gene

No data available for Paralogs for GC16M004952 Gene

Variants for GC16M004952 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC16M004952 Gene

Disorders for GC16M004952 Gene

No disorders were found for GC16M004952 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC16M004952 Gene

Publications for GC16M004952 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

No data available for External Links for GC16M004952 Gene

Products for GC16M004952 Gene

Sources for GC16M004952 Gene

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