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Aliases for GC15P028070 Gene

Subcategory (RNA class) for GC15P028070 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for GC15P028070 Gene

No Aliases found

ORGUL Members for GC15P028070 Gene

No data available for External Ids for GC15P028070 Gene

Summaries for GC15P028070 Gene

GeneCards Summary for GC15P028070 Gene

GC15P028070 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC15P028070 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC15P028070

Additional gene information for GC15P028070 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC15P028070 Gene

Genomics for GC15P028070 Gene

GeneHancer (GH) Regulatory Elements for GC15P028070 Gene

Promoters and enhancers for GC15P028070 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I028098 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.3 +28.2 28218 1.5 HDGF ARNT TCF12 GLIS2 ARID2 ZNF207 ATF7 MCM3 SP3 REST OCA2 HERC2 GC15P028070
GH15I028093 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +24.9 24861 3.7 HDAC1 HDGF PKNOX1 ATF1 ARID4B SIN3A ZNF335 GLIS2 EGR1 KLF7 HERC2 OCA2 GC15P028070
GH15I028082 Enhancer 0.8 ENCODE 0.4 +12.5 12464 2.1 MLX ARID4B DMAP1 RAD21 RARA YY1 SLC30A9 THAP11 MIXL1 RXRA HERC2 GC15P028070 OCA2
GH15I028087 Enhancer 0.6 ENCODE 0.4 +15.4 15385 0.2 CTCF ZNF654 RXRA REST RAD21 ZNF143 SMC3 CREM HOMEZ MIXL1 OCA2 GC15P028070
GH15I028086 Enhancer 0.5 ENCODE 0.4 +15.6 15615 0.2 CTCF RXRA ZNF143 REST HOMEZ MIXL1 OCA2 GC15P028070
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC15P028070 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC15P028070 Gene

Genomic Locations for GC15P028070 Gene
chr15:28,070,935-28,070,965
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for GC15P028070 Gene

Genes around GC15P028070 on UCSC Golden Path with GeneCards custom track

GC15P028070 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC15P028070 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC15P028070 Gene

ORGUL Member Location for GC15P028070 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC15P028070 Gene

Proteins for GC15P028070 Gene

Post-translational modifications for GC15P028070 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC15P028070 Gene

Domains & Families for GC15P028070 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC15P028070 Gene

Function for GC15P028070 Gene

Phenotypes From GWAS Catalog for GC15P028070 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC15P028070 Gene

Localization for GC15P028070 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC15P028070 Gene

Pathways & Interactions for GC15P028070 Gene

SuperPathways for GC15P028070 Gene

No Data Available

Interacting Proteins for GC15P028070 Gene

Gene Ontology (GO) - Biological Process for GC15P028070 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC15P028070 Gene

Drugs & Compounds for GC15P028070 Gene

No Compound Related Data Available

Transcripts for GC15P028070 Gene

fRNAdb Secondary structures for GC15P028070 Gene

  • FR273550
  • FR111751

Alternative Splicing Database (ASD) splice patterns (SP) for GC15P028070 Gene

No ASD Table

Relevant External Links for GC15P028070 Gene

GeneLoc Exon Structure for
GC15P028070

No data available for mRNA/cDNA for GC15P028070 Gene

Expression for GC15P028070 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC15P028070 Gene

Orthologs for GC15P028070 Gene

No data available for Orthologs and Evolution for GC15P028070 Gene

Paralogs for GC15P028070 Gene

No data available for Paralogs for GC15P028070 Gene

Variants for GC15P028070 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC15P028070 Gene

Disorders for GC15P028070 Gene

No disorders were found for GC15P028070 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC15P028070 Gene

Publications for GC15P028070 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC15P028070 Gene

Sources for GC15P028070 Gene

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