Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC15M066533 Gene

Subcategory (RNA class) for GC15M066533 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for GC15M066533 Gene

No Aliases found

ORGUL Members for GC15M066533 Gene

No data available for External Ids for GC15M066533 Gene

Summaries for GC15M066533 Gene

GeneCards Summary for GC15M066533 Gene

GC15M066533 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC15M066533 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

View fRNAdb secondary structures for GC15M066533

Additional gene information for GC15M066533 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC15M066533 Gene

Genomics for GC15M066533 Gene

GeneHancer (GH) Regulatory Elements for GC15M066533 Gene

Promoters and enhancers for GC15M066533 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I066500 Enhancer 0.3 ENCODE 550.8 -0.1 -88 0.8 POLR2A ENSG00000280554 GC15M066499 GC15M066533 GC15M066534 GC15M066535 GC15M066537 PIR57266 SNORD16 SNORD18A SNORD18B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC15M066533 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC15M066533 Gene

Genomic Locations for GC15M066533 Gene
chr15:66,501,249-66,501,318
(GRCh38/hg38)
Size:
70 bases
Orientation:
Minus strand

Genomic View for GC15M066533 Gene

Genes around GC15M066533 on UCSC Golden Path with GeneCards custom track

GC15M066533 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC15M066533 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC15M066533 Gene

ORGUL Member Location for GC15M066533 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC15M066533 Gene

Proteins for GC15M066533 Gene

Post-translational modifications for GC15M066533 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC15M066533 Gene

Domains & Families for GC15M066533 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC15M066533 Gene

Function for GC15M066533 Gene

Animal Model Products

miRNA for GC15M066533 Gene

miRTarBase miRNAs that target GC15M066533

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC15M066533 Gene

Localization for GC15M066533 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC15M066533 Gene

Pathways & Interactions for GC15M066533 Gene

SuperPathways for GC15M066533 Gene

No Data Available

Interacting Proteins for GC15M066533 Gene

Gene Ontology (GO) - Biological Process for GC15M066533 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC15M066533 Gene

Drugs & Compounds for GC15M066533 Gene

No Compound Related Data Available

Transcripts for GC15M066533 Gene

fRNAdb Secondary structures for GC15M066533 Gene

  • FR027336
  • FR215332

Alternative Splicing Database (ASD) splice patterns (SP) for GC15M066533 Gene

No ASD Table

Relevant External Links for GC15M066533 Gene

GeneLoc Exon Structure for
GC15M066533

No data available for mRNA/cDNA for GC15M066533 Gene

Expression for GC15M066533 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC15M066533 Gene

Orthologs for GC15M066533 Gene

No data available for Orthologs and Evolution for GC15M066533 Gene

Paralogs for GC15M066533 Gene

No data available for Paralogs for GC15M066533 Gene

Variants for GC15M066533 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC15M066533 Gene

Disorders for GC15M066533 Gene

No disorders were found for GC15M066533 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC15M066533 Gene

Publications for GC15M066533 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Release of U18 snoRNA from its host intron requires interaction of Nop1p with the Rnt1p endonuclease. (PMID: 11726521) Giorgi C … Bozzoni I (The EMBO journal 2001) 1
  5. Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. (PMID: 10736225) Gaspin C … Bachellerie JP (Journal of molecular biology 2000) 1

Products for GC15M066533 Gene

Sources for GC15M066533 Gene

Content
Loading form....