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Aliases for GC15M031066 Gene

Subcategory (RNA class) for GC15M031066 Gene

miRNA

Quality Score for this RNA gene is

11.2

Aliases for GC15M031066 Gene

No Aliases found

No data available for External Ids for GC15M031066 Gene

Summaries for GC15M031066 Gene

GeneCards Summary for GC15M031066 Gene

GC15M031066 is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for GC15M031066 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for GC15M031066

Additional gene information for GC15M031066 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC15M031066 Gene

Genomics for GC15M031066 Gene

GeneHancer (GH) Regulatory Elements for GC15M031066 Gene

Promoters and enhancers for GC15M031066 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I031049 Enhancer 0.7 Ensembl ENCODE 0.4 +15.3 15267 1.7 IRF2 ETV6 ELF1 NR2C2 SPI1 MTMR10 OTUD7A GC15M031066 MIR211 LOC105370752 TRPM1
GH15I031031 Enhancer 0.7 Ensembl ENCODE 0.3 +32.5 32469 2.5 MAX MLLT1 MYC RUNX3 MTMR10 CHRNA7 LOC105370752 ENSG00000259720 MIR211 GC15M031066 TRPM1
GH15I031034 Enhancer 0.5 ENCODE 0.3 +30.8 30808 0.2 SMARCE1 CTCF GATA3 DPF2 MTMR10 ENSG00000215302 LOC105370752 ENSG00000259720 MIR211 GC15M031066 TRPM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC15M031066 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC15M031066 Gene

Genomic Locations for GC15M031066 Gene
chr15:31,065,031-31,065,141
(GRCh38/hg38)
Size:
111 bases
Orientation:
Minus strand

Genomic View for GC15M031066 Gene

Genes around GC15M031066 on UCSC Golden Path with GeneCards custom track

GC15M031066 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC15M031066 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC15M031066 Gene

ORGUL Member Location for GC15M031066 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC15M031066 Gene

Proteins for GC15M031066 Gene

Post-translational modifications for GC15M031066 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC15M031066 Gene

Domains & Families for GC15M031066 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC15M031066 Gene

Function for GC15M031066 Gene

Animal Model Products

miRNA for GC15M031066 Gene

miRTarBase miRNAs that target GC15M031066

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC15M031066 Gene

Localization for GC15M031066 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC15M031066 Gene

Pathways & Interactions for GC15M031066 Gene

SuperPathways for GC15M031066 Gene

No Data Available

Interacting Proteins for GC15M031066 Gene

Gene Ontology (GO) - Biological Process for GC15M031066 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC15M031066 Gene

Drugs & Compounds for GC15M031066 Gene

No Compound Related Data Available

Transcripts for GC15M031066 Gene

fRNAdb Secondary structures for GC15M031066 Gene

  • FR211556
  • FR270337

Alternative Splicing Database (ASD) splice patterns (SP) for GC15M031066 Gene

No ASD Table

Relevant External Links for GC15M031066 Gene

GeneLoc Exon Structure for
GC15M031066

No data available for mRNA/cDNA for GC15M031066 Gene

Expression for GC15M031066 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC15M031066 Gene

Orthologs for GC15M031066 Gene

No data available for Orthologs and Evolution for GC15M031066 Gene

Paralogs for GC15M031066 Gene

No data available for Paralogs for GC15M031066 Gene

Variants for GC15M031066 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC15M031066 Gene

Disorders for GC15M031066 Gene

No disorders were found for GC15M031066 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC15M031066 Gene

Publications for GC15M031066 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. NONCODE: an integrated knowledge database of non-coding RNAs. (PMID: 15608158) Liu C … Chen R (Nucleic acids research 2005) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Vertebrate microRNA genes. (PMID: 12624257) Lim LP … Bartel DP (Science (New York, N.Y.) 2003) 1
  5. Evolutionary biology. Small but mighty timekeepers. (PMID: 11081491) Adoutte A (Nature 2000) 1

Products for GC15M031066 Gene

Sources for GC15M031066 Gene

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