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Aliases for GC15M030957 Gene

Subcategory (RNA class) for GC15M030957 Gene

snRNA

Quality Score for this RNA gene is

12

Aliases for GC15M030957 Gene

No Aliases found

ORGUL Members for GC15M030957 Gene

No data available for External Ids for GC15M030957 Gene

Summaries for GC15M030957 Gene

GeneCards Summary for GC15M030957 Gene

GC15M030957 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC15M030957 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC15M030957 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC15M030957 Gene

Genomics for GC15M030957 Gene

GeneHancer (GH) Regulatory Elements for GC15M030957 Gene

Promoters and enhancers for GC15M030957 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I030955 Enhancer 0.6 dbSUPER 550.8 -0.1 -108 2.6 MEIS2 USF2 MAX CEBPB ZMYM3 CEBPG ZNF398 ZNF623 ATF2 ATF4 GC15M030957 RNU6-466P MTMR10 ENSG00000215302 CHRFAM7A GOLGA8R HERC2P10
GH15I030954 Enhancer 0.5 ENCODE dbSUPER 550.8 +1.5 1453 0 CEBPB GC15M030957 RNU6-466P ENSG00000270015 MTMR10
GH15I030988 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 0.3 -34.3 -34253 4.8 PKNOX1 FOXA2 ARID4B SIN3A YY1 POLR2B ZNF207 ZNF143 REST ZNF592 MTMR10 HERC2P10 TRPM1 RNU6-466P FAN1 ENSG00000260382 ENSG00000215302 GC15M030957
GH15I030962 Enhancer 0.7 ENCODE dbSUPER 0.4 -6.2 -6203 1.2 POLR2A BCL6B SCRT2 PRDM10 MTMR10 FAN1 TRPM1 GC15M030957
GH15I030977 Enhancer 0.9 dbSUPER 0.3 -21.6 -21607 1.7 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 ATF7 NCOA1 RNU6-466P MTMR10 ENSG00000260382 ENSG00000215302 GC15M030957
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC15M030957 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC15M030957 Gene

Genomic Locations for GC15M030957 Gene
chr15:30,956,247-30,956,351
(GRCh38/hg38)
Size:
105 bases
Orientation:
Minus strand

Genomic View for GC15M030957 Gene

Genes around GC15M030957 on UCSC Golden Path with GeneCards custom track

GC15M030957 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC15M030957 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC15M030957 Gene

Proteins for GC15M030957 Gene

Post-translational modifications for GC15M030957 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC15M030957 Gene

Domains & Families for GC15M030957 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC15M030957 Gene

Function for GC15M030957 Gene

Animal Model Products

miRNA for GC15M030957 Gene

miRTarBase miRNAs that target GC15M030957

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC15M030957 Gene

Localization for GC15M030957 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC15M030957 Gene

Pathways & Interactions for GC15M030957 Gene

SuperPathways for GC15M030957 Gene

No Data Available

Interacting Proteins for GC15M030957 Gene

Gene Ontology (GO) - Biological Process for GC15M030957 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC15M030957 Gene

Drugs & Compounds for GC15M030957 Gene

No Compound Related Data Available

Transcripts for GC15M030957 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC15M030957 Gene

No ASD Table

Relevant External Links for GC15M030957 Gene

GeneLoc Exon Structure for
GC15M030957

No data available for mRNA/cDNA for GC15M030957 Gene

Expression for GC15M030957 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC15M030957 Gene

Orthologs for GC15M030957 Gene

No data available for Orthologs and Evolution for GC15M030957 Gene

Paralogs for GC15M030957 Gene

No data available for Paralogs for GC15M030957 Gene

Variants for GC15M030957 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC15M030957 Gene

Disorders for GC15M030957 Gene

No disorders were found for GC15M030957 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC15M030957 Gene

Publications for GC15M030957 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC15M030957 Gene

Sources for GC15M030957 Gene

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