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Aliases for GC15M026009 Gene

Subcategory (RNA class) for GC15M026009 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC15M026009 Gene

No Aliases found

ORGUL Members for GC15M026009 Gene

No data available for External Ids for GC15M026009 Gene

Summaries for GC15M026009 Gene

GeneCards Summary for GC15M026009 Gene

GC15M026009 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC15M026009 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC15M026009 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC15M026009 Gene

Genomics for GC15M026009 Gene

GeneHancer (GH) Regulatory Elements for GC15M026009 Gene

Promoters and enhancers for GC15M026009 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J026026 Enhancer 0.5 ENCODE 0.4 -17.4 -17355 0.2 SMARCE1 CTBP1 GATA3 ESRRA FOS ZNF592 ENSG00000212604 GC15M026009 ENSG00000258931 LINC02346
GH15J025933 Enhancer 0.8 Ensembl ENCODE 0.2 +74.9 74942 1.1 CTCF TFAP4 ZNF654 ZNF680 SIN3A ZNF384 RAD21 XRCC5 ZNF143 MRPS18CP5 LINC02346 ENSG00000212604 GC15M026009
GH15J025970 Enhancer 0.5 FANTOM5 ENCODE 0.3 +37.0 37026 2.5 ZBTB21 GC15M026009 ENSG00000212604 MRPS18CP5 LINC02346
GH15J025947 Enhancer 0.7 Ensembl ENCODE 0.2 +61.5 61545 0.3 CTCF ZNF654 ZNF189 ZIC2 RAD21 MRPS18CP5 LINC02346 GC15M026009 ENSG00000212604
GH15J026027 Enhancer 0.3 ENCODE 0.4 -19.4 -19357 1 MAFK LINC02346 ENSG00000212604 GC15M026009 ENSG00000258931
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC15M026009 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC15M026009 Gene

Genomic Locations for GC15M026009 Gene
chr15:26,008,939-26,009,074
(GRCh38/hg38)
Size:
136 bases
Orientation:
Minus strand

Genomic View for GC15M026009 Gene

Genes around GC15M026009 on UCSC Golden Path with GeneCards custom track

GC15M026009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC15M026009 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC15M026009 Gene

Proteins for GC15M026009 Gene

Post-translational modifications for GC15M026009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC15M026009 Gene

Domains & Families for GC15M026009 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC15M026009 Gene

Function for GC15M026009 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC15M026009 Gene

Localization for GC15M026009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC15M026009 Gene

Pathways & Interactions for GC15M026009 Gene

SuperPathways for GC15M026009 Gene

No Data Available

Interacting Proteins for GC15M026009 Gene

Gene Ontology (GO) - Biological Process for GC15M026009 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC15M026009 Gene

Drugs & Compounds for GC15M026009 Gene

No Compound Related Data Available

Transcripts for GC15M026009 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC15M026009 Gene

No ASD Table

Relevant External Links for GC15M026009 Gene

GeneLoc Exon Structure for
GC15M026009

No data available for mRNA/cDNA for GC15M026009 Gene

Expression for GC15M026009 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC15M026009 Gene

Orthologs for GC15M026009 Gene

No data available for Orthologs and Evolution for GC15M026009 Gene

Paralogs for GC15M026009 Gene

No data available for Paralogs for GC15M026009 Gene

Variants for GC15M026009 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC15M026009 Gene

Disorders for GC15M026009 Gene

No disorders were found for GC15M026009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC15M026009 Gene

Publications for GC15M026009 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  2. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 1

Products for GC15M026009 Gene

Sources for GC15M026009 Gene

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