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Aliases for GC14P091127 Gene

Subcategory (RNA class) for GC14P091127 Gene

snoRNA

Quality Score for this RNA gene is

12

Aliases for GC14P091127 Gene

No Aliases found

No data available for External Ids for GC14P091127 Gene

Summaries for GC14P091127 Gene

GeneCards Summary for GC14P091127 Gene

GC14P091127 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC14P091127 Gene - the ORGUL cluster for this gene includes several descriptions:

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

View fRNAdb secondary structures for GC14P091127

Additional gene information for GC14P091127 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC14P091127 Gene

Genomics for GC14P091127 Gene

GeneHancer (GH) Regulatory Elements for GC14P091127 Gene

Promoters and enhancers for GC14P091127 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I091123 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 -0.2 -164 5.3 HDAC1 PKNOX1 CLOCK NFIB NEUROD1 SIN3A BMI1 ZBTB40 ZNF121 ZNF766 GC14P091127 SNORA11B DGLUCY PPP4R3A ATXN3 TTC7B GC14P091092
GH14I091112 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 0.4 -9.3 -9294 8.4 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B DGLUCY TRIP11 PPP4R3A NRDE2 RNU7-30P ATXN3 RPS6KA5 RPS18P2 RPL21P11 GC14P091127
GH14I091107 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.2 -17202 3.1 PKNOX1 CLOCK NFIB ZSCAN4 BATF ZNF335 ETV6 IKZF2 RUNX3 ZNF680 DGLUCY RPS6KA5 CCDC88C PPP4R3A GPR68 GC14P091092 GC14P091127
GH14I091090 Enhancer 0.3 ENCODE 0.3 -35.2 -35154 1.5 SCRT1 GC14P091092 RNU7-30P RPS6KA5 DGLUCY GC14P091127
GH14I091095 Enhancer 0.2 ENCODE 0.3 -30.4 -30432 0.2 GC14P091092 GC14P091127 DGLUCY
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC14P091127 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC14P091127 Gene

Genomic Locations for GC14P091127 Gene
chr14:91,126,424-91,126,553
(GRCh38/hg38)
Size:
130 bases
Orientation:
Plus strand

Genomic View for GC14P091127 Gene

Genes around GC14P091127 on UCSC Golden Path with GeneCards custom track

GC14P091127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC14P091127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC14P091127 Gene

ORGUL Member Location for GC14P091127 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC14P091127 Gene

Proteins for GC14P091127 Gene

Post-translational modifications for GC14P091127 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC14P091127 Gene

Domains & Families for GC14P091127 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC14P091127 Gene

Function for GC14P091127 Gene

Phenotypes From GWAS Catalog for GC14P091127 Gene

Animal Model Products

miRNA for GC14P091127 Gene

miRTarBase miRNAs that target GC14P091127

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC14P091127 Gene

Localization for GC14P091127 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC14P091127 Gene

Pathways & Interactions for GC14P091127 Gene

SuperPathways for GC14P091127 Gene

No Data Available

Interacting Proteins for GC14P091127 Gene

Gene Ontology (GO) - Biological Process for GC14P091127 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC14P091127 Gene

Drugs & Compounds for GC14P091127 Gene

No Compound Related Data Available

Transcripts for GC14P091127 Gene

fRNAdb Secondary structures for GC14P091127 Gene

  • FR407725
  • FR406555

Alternative Splicing Database (ASD) splice patterns (SP) for GC14P091127 Gene

No ASD Table

Relevant External Links for GC14P091127 Gene

GeneLoc Exon Structure for
GC14P091127

No data available for mRNA/cDNA for GC14P091127 Gene

Expression for GC14P091127 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC14P091127 Gene

Orthologs for GC14P091127 Gene

No data available for Orthologs and Evolution for GC14P091127 Gene

Paralogs for GC14P091127 Gene

No data available for Paralogs for GC14P091127 Gene

Variants for GC14P091127 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC14P091127 Gene

Disorders for GC14P091127 Gene

No disorders were found for GC14P091127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC14P091127 Gene

Publications for GC14P091127 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 1
  4. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1
  5. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for GC14P091127 Gene

Sources for GC14P091127 Gene

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