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Aliases for GC14M103316 Gene

Subcategory (RNA class) for GC14M103316 Gene

rRNA

Quality Score for this RNA gene is

15

Aliases for GC14M103316 Gene

No Aliases found

ORGUL Members for GC14M103316 Gene

No data available for External Ids for GC14M103316 Gene

Summaries for GC14M103316 Gene

GeneCards Summary for GC14M103316 Gene

GC14M103316 is an RNA Gene, and is affiliated with the rRNA class.

fRNAdb sequence ontologies for GC14M103316 Gene

  • rRNA_5S: 5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilises 5S rRNA until it is required for transcription.

Additional gene information for GC14M103316 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC14M103316 Gene

Genomics for GC14M103316 Gene

GeneHancer (GH) Regulatory Elements for GC14M103316 Gene

Promoters and enhancers for GC14M103316 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J103314 Enhancer 1.2 FANTOM5 ENCODE 600.7 +1.7 1697 1.7 CC2D1A ELF3 ZKSCAN8 CBFA2T2 CEBPG TRIM24 SP1 ZNF644 ZNF639 SMARCA4 GC14M103316 LOC105378183 LOC105370686 ENSG00000259775 TNFAIP2 EXOC3L4 ENSG00000240624
GH14J103316 Enhancer 0.4 ENCODE 600.7 0.0 -11 0.2 ZFHX2 EGR2 GC14M103316 LOC105378183 LOC105370686
GH14J103317 Enhancer 0.3 ENCODE 600.7 -0.4 -393 0.4 POLR2A GC14M103316 LOC105378183 LOC105370686 ENSG00000259775
GH14J103318 Enhancer 0.2 ENCODE 600.7 -0.1 -114 0 GC14M103316 LOC105370686 LOC105378183
GH14J103292 Enhancer 1 Ensembl ENCODE 0.3 +23.9 23928 0.6 CC2D1A CTCF RELA EGR1 RAD21 ARID2 ZNF143 REST RXRB LARP7 ENSG00000240624 GC14M103316 GC14P104067
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC14M103316 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC14M103316 Gene

Genomic Locations for GC14M103316 Gene
chr14:103,316,924-103,317,028
(GRCh38/hg38)
Size:
105 bases
Orientation:
Minus strand

Genomic View for GC14M103316 Gene

Genes around GC14M103316 on UCSC Golden Path with GeneCards custom track

GC14M103316 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC14M103316 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC14M103316 Gene

Proteins for GC14M103316 Gene

Post-translational modifications for GC14M103316 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC14M103316 Gene

Domains & Families for GC14M103316 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC14M103316 Gene

Function for GC14M103316 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC14M103316 Gene

Localization for GC14M103316 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC14M103316 Gene

Pathways & Interactions for GC14M103316 Gene

PathCards logo

SuperPathways for GC14M103316 Gene

No Data Available

Interacting Proteins for GC14M103316 Gene

Gene Ontology (GO) - Biological Process for GC14M103316 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC14M103316 Gene

Drugs & Compounds for GC14M103316 Gene

No Compound Related Data Available

Transcripts for GC14M103316 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC14M103316 Gene

No ASD Table

Relevant External Links for GC14M103316 Gene

GeneLoc Exon Structure for
GC14M103316

No data available for mRNA/cDNA for GC14M103316 Gene

Expression for GC14M103316 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC14M103316 Gene

Orthologs for GC14M103316 Gene

No data available for Orthologs and Evolution for GC14M103316 Gene

Paralogs for GC14M103316 Gene

No data available for Paralogs for GC14M103316 Gene

Variants for GC14M103316 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC14M103316 Gene

Disorders for GC14M103316 Gene

No disorders were found for GC14M103316 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC14M103316 Gene

Publications for GC14M103316 Gene

  1. 5S Ribosomal RNA Database. (PMID: 11752286) Szymanski M … Barciszewski J (Nucleic acids research 2002) 1
  2. Crystal structure of the ribosome at 5.5 A resolution. (PMID: 11283358) Yusupov MM … Noller HF (Science (New York, N.Y.) 2001) 1
  3. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA. (PMID: 10926492) Searles MA … Klug A (Journal of molecular biology 2000) 1

No data available for External Links for GC14M103316 Gene

Products for GC14M103316 Gene

Sources for GC14M103316 Gene

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