Free for academic non-profit institutions. Other users need a Commercial license

Aliases for GC13P048988 Gene

Subcategory (RNA class) for GC13P048988 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC13P048988 Gene

No Aliases found

ORGUL Members for GC13P048988 Gene

No data available for External Ids for GC13P048988 Gene

Summaries for GC13P048988 Gene

GeneCards Summary for GC13P048988 Gene

GC13P048988 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC13P048988 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC13P048988 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC13P048988 Gene

Genomics for GC13P048988 Gene

GeneHancer (GH) Regulatory Elements for GC13P048988 Gene

Promoters and enhancers for GC13P048988 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J048988 Enhancer 0.3 FANTOM5 650.7 +1.1 1137 0.3 GC13P048988 RNU6-60P FNDC3A SETDB2 CYSLTR2 CDADC1 RCBTB2 RAD17P2
GH13J048974 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -10.2 -10212 6.2 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 IRF4 YY1 POLR2B ZNF213 FNDC3A ENSG00000275202 GC13M048972 SETDB2 MED4 CDADC1 GC13P048988
GH13J048981 Enhancer 0.2 Ensembl 0.4 -6.2 -6213 0.2 ENSG00000275202 FNDC3A GC13P048988
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC13P048988 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC13P048988 Gene

Genomic Locations for GC13P048988 Gene
chr13:48,987,914-48,988,017
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for GC13P048988 Gene

Genes around GC13P048988 on UCSC Golden Path with GeneCards custom track

GC13P048988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC13P048988 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC13P048988 Gene

Proteins for GC13P048988 Gene

Post-translational modifications for GC13P048988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC13P048988 Gene

Domains & Families for GC13P048988 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC13P048988 Gene

Function for GC13P048988 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC13P048988 Gene

Localization for GC13P048988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC13P048988 Gene

Pathways & Interactions for GC13P048988 Gene

SuperPathways for GC13P048988 Gene

No Data Available

Interacting Proteins for GC13P048988 Gene

Gene Ontology (GO) - Biological Process for GC13P048988 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC13P048988 Gene

Drugs & Compounds for GC13P048988 Gene

No Compound Related Data Available

Transcripts for GC13P048988 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC13P048988 Gene

No ASD Table

Relevant External Links for GC13P048988 Gene

GeneLoc Exon Structure for
GC13P048988

No data available for mRNA/cDNA for GC13P048988 Gene

Expression for GC13P048988 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC13P048988 Gene

Orthologs for GC13P048988 Gene

No data available for Orthologs and Evolution for GC13P048988 Gene

Paralogs for GC13P048988 Gene

No data available for Paralogs for GC13P048988 Gene

Variants for GC13P048988 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC13P048988 Gene

Disorders for GC13P048988 Gene

No disorders were found for GC13P048988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC13P048988 Gene

Publications for GC13P048988 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC13P048988 Gene

Sources for GC13P048988 Gene

Content
Loading form....