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Aliases for GC13P046617 Gene

Subcategory (RNA class) for GC13P046617 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC13P046617 Gene

No Aliases found

ORGUL Members for GC13P046617 Gene

No data available for External Ids for GC13P046617 Gene

Summaries for GC13P046617 Gene

GeneCards Summary for GC13P046617 Gene

GC13P046617 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC13P046617 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for GC13P046617 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC13P046617 Gene

Genomics for GC13P046617 Gene

GeneHancer (GH) Regulatory Elements for GC13P046617 Gene

Promoters and enhancers for GC13P046617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J046614 Enhancer 1.2 Ensembl ENCODE dbSUPER 650.7 -0.8 -816 3.1 INSM2 FEZF1 ZNF2 ZNF213 ZNF366 ZSCAN5C FOS OVOL3 CEBPB TSHZ1 GC13P046617 LRCH1 GC13P046577
GH13J046618 Enhancer 0.4 dbSUPER 650.7 +1.7 1737 1.1 ZNF366 EBF1 ETV6 GC13P046617 RUBCNL LRCH1 ENSG00000278462
GH13J046619 Enhancer 0.4 ENCODE dbSUPER 650.7 +1.0 1012 0.2 GC13P046617 LRCH1 ENSG00000278462
GH13J046604 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -9.8 -9809 6.2 PKNOX1 FOXA2 MLX FEZF1 DMAP1 ZNF48 ETS1 SLC30A9 ZNF143 ATF7 LRCH1 RNU2-6P RUBCNL GC13P046617 GC13P046577
GH13J046594 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -19.0 -19032 7.1 FOXA2 ZSCAN4 ZNF2 RAD21 YY1 ZSCAN5C FOS IKZF2 RUNX3 RXRA LRCH1 GC13P046617 GC13P046577
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC13P046617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC13P046617 Gene

Genomic Locations for GC13P046617 Gene
chr13:46,617,069-46,617,101
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand

Genomic View for GC13P046617 Gene

Genes around GC13P046617 on UCSC Golden Path with GeneCards custom track

GC13P046617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC13P046617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC13P046617 Gene

ORGUL Member Location for GC13P046617 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC13P046617 Gene

Proteins for GC13P046617 Gene

Post-translational modifications for GC13P046617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC13P046617 Gene

Domains & Families for GC13P046617 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC13P046617 Gene

Function for GC13P046617 Gene

Phenotypes From GWAS Catalog for GC13P046617 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC13P046617 Gene

Localization for GC13P046617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC13P046617 Gene

Pathways & Interactions for GC13P046617 Gene

SuperPathways for GC13P046617 Gene

No Data Available

Interacting Proteins for GC13P046617 Gene

Gene Ontology (GO) - Biological Process for GC13P046617 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC13P046617 Gene

Drugs & Compounds for GC13P046617 Gene

No Compound Related Data Available

Transcripts for GC13P046617 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC13P046617 Gene

No ASD Table

Relevant External Links for GC13P046617 Gene

GeneLoc Exon Structure for
GC13P046617

No data available for mRNA/cDNA for GC13P046617 Gene

Expression for GC13P046617 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC13P046617 Gene

Orthologs for GC13P046617 Gene

No data available for Orthologs and Evolution for GC13P046617 Gene

Paralogs for GC13P046617 Gene

No data available for Paralogs for GC13P046617 Gene

Variants for GC13P046617 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC13P046617 Gene

Disorders for GC13P046617 Gene

No disorders were found for GC13P046617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC13P046617 Gene

Publications for GC13P046617 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for GC13P046617 Gene

Sources for GC13P046617 Gene

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