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Aliases for GC13P046411 Gene

Subcategory (RNA class) for GC13P046411 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC13P046411 Gene

No Aliases found

ORGUL Members for GC13P046411 Gene

No data available for External Ids for GC13P046411 Gene

Summaries for GC13P046411 Gene

GeneCards Summary for GC13P046411 Gene

GC13P046411 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC13P046411 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC13P046411 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC13P046411 Gene

Genomics for GC13P046411 Gene

GeneHancer (GH) Regulatory Elements for GC13P046411 Gene

Promoters and enhancers for GC13P046411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J046372 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -28.3 -28284 18.9 HDGF ATF1 PKNOX1 SMAD1 SIN3A YBX1 IRF4 ZNF48 TCF12 GLIS2 RUBCNL GC13P046380 OR7E101P COG3 LINC01198 LRCH1 LCP1 GC13M046376 RNU2-6P GC13P046411
GH13J046403 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.7 -5713 2.3 CTCF PKNOX1 RFX1 ZNF341 MAX ETV6 MYC SPI1 OR7E101P LCP1 RNU2-6P LINC01198 RUBCNL ZC3H13 GC13P046411 GC13P046380
GH13J046393 Enhancer 0.8 ENCODE dbSUPER 0.4 -17.3 -17332 0.2 NR2F1 ZBED1 JUNB DPF2 BATF ATF2 GATA3 BCL11A IKZF1 EED GC13P046380 GC13P046411 RUBCNL
GH13J046400 Enhancer 0.4 ENCODE dbSUPER 0.4 -9.8 -9835 0.1 RNU2-6P GC13P046411 GC13P046380 RUBCNL
GH13J046401 Enhancer 0.3 dbSUPER 0.4 -9.0 -9024 0.8 POLR2A LINC01198 RNU2-6P GC13P046411 GC13P046380 RUBCNL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC13P046411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC13P046411 Gene

Genomic Locations for GC13P046411 Gene
chr13:46,410,453-46,410,557
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand

Genomic View for GC13P046411 Gene

Genes around GC13P046411 on UCSC Golden Path with GeneCards custom track

GC13P046411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC13P046411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC13P046411 Gene

Proteins for GC13P046411 Gene

Post-translational modifications for GC13P046411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC13P046411 Gene

Domains & Families for GC13P046411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC13P046411 Gene

Function for GC13P046411 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC13P046411 Gene

Localization for GC13P046411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC13P046411 Gene

Pathways & Interactions for GC13P046411 Gene

SuperPathways for GC13P046411 Gene

No Data Available

Interacting Proteins for GC13P046411 Gene

Gene Ontology (GO) - Biological Process for GC13P046411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC13P046411 Gene

Drugs & Compounds for GC13P046411 Gene

No Compound Related Data Available

Transcripts for GC13P046411 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC13P046411 Gene

No ASD Table

Relevant External Links for GC13P046411 Gene

GeneLoc Exon Structure for
GC13P046411

No data available for mRNA/cDNA for GC13P046411 Gene

Expression for GC13P046411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC13P046411 Gene

Orthologs for GC13P046411 Gene

No data available for Orthologs and Evolution for GC13P046411 Gene

Paralogs for GC13P046411 Gene

No data available for Paralogs for GC13P046411 Gene

Variants for GC13P046411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC13P046411 Gene

Disorders for GC13P046411 Gene

No disorders were found for GC13P046411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC13P046411 Gene

Publications for GC13P046411 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC13P046411 Gene

Sources for GC13P046411 Gene

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