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Aliases for GC13P027834 Gene

Subcategory (RNA class) for GC13P027834 Gene

snRNA

Quality Score for this RNA gene is

12

Aliases for GC13P027834 Gene

No Aliases found

ORGUL Members for GC13P027834 Gene

No data available for External Ids for GC13P027834 Gene

Summaries for GC13P027834 Gene

GeneCards Summary for GC13P027834 Gene

GC13P027834 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC13P027834 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC13P027834 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC13P027834 Gene

Genomics for GC13P027834 Gene

GeneHancer (GH) Regulatory Elements for GC13P027834 Gene

Promoters and enhancers for GC13P027834 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I027826 Enhancer 1.1 Ensembl ENCODE 550.8 -2.0 -1987 1.4 INSM2 KLF17 FEZF1 ZNF2 RAD21 ZNF335 GLIS2 ZNF366 ZSCAN5C ZNF143 GC13P027834 RNU6-73P GSX1 PLUT
GH13I027829 Enhancer 1 Ensembl ENCODE 550.8 +1.4 1351 0.6 RB1 ARID4B ZNF48 RAD21 ZEB1 ZNF143 ZNF654 HCFC1 REST ZEB2 RNU6-73P GC13P027834 GSX1 LOC105370130 PLUT
GH13I027821 Enhancer 1.3 VISTA UCNEbase ENCODE 0.4 -6.4 -6441 2.2 USF1 MTA2 SUZ12 HDAC2 EZH2 GSX1 CDX2 RNU6-63P GC13P027834 PLUT
GH13I027793 Promoter 1 EPDnew 0.3 -36.1 -36068 0.1 CTCF ELF3 ZNF792 SUZ12 ARID4B MAX BACH1 ZIC2 ZNF644 HIC1 GSX1 GC13P027834
GH13I027822 Enhancer 0.4 ENCODE 0.4 -7.7 -7663 0.2 SUZ12 EZH2 GSX1 CDX2 RNU6-63P GC13P027834 PLUT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around GC13P027834 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC13P027834 Gene

Genomic Locations for GC13P027834 Gene
chr13:27,828,762-27,828,869
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC13P027834 Gene

Genes around GC13P027834 on UCSC Golden Path with GeneCards custom track

GC13P027834 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC13P027834 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC13P027834 Gene

Proteins for GC13P027834 Gene

Post-translational modifications for GC13P027834 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC13P027834 Gene

Domains & Families for GC13P027834 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC13P027834 Gene

Function for GC13P027834 Gene

Animal Model Products

miRNA for GC13P027834 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for GC13P027834 Gene

Localization for GC13P027834 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC13P027834 Gene

Pathways & Interactions for GC13P027834 Gene

SuperPathways for GC13P027834 Gene

No Data Available

Interacting Proteins for GC13P027834 Gene

Gene Ontology (GO) - Biological Process for GC13P027834 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC13P027834 Gene

Drugs & Compounds for GC13P027834 Gene

No Compound Related Data Available

Transcripts for GC13P027834 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC13P027834 Gene

No ASD Table

Relevant External Links for GC13P027834 Gene

GeneLoc Exon Structure for
GC13P027834

No data available for mRNA/cDNA for GC13P027834 Gene

Expression for GC13P027834 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC13P027834 Gene

Orthologs for GC13P027834 Gene

No data available for Orthologs and Evolution for GC13P027834 Gene

Paralogs for GC13P027834 Gene

No data available for Paralogs for GC13P027834 Gene

Variants for GC13P027834 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC13P027834 Gene

Disorders for GC13P027834 Gene

No disorders were found for GC13P027834 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC13P027834 Gene

Publications for GC13P027834 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

Products for GC13P027834 Gene

Sources for GC13P027834 Gene

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