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Aliases for GC12P116083 Gene

Subcategory (RNA class) for GC12P116083 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC12P116083 Gene

No Aliases found

ORGUL Members for GC12P116083 Gene

No data available for External Ids for GC12P116083 Gene

Summaries for GC12P116083 Gene

GeneCards Summary for GC12P116083 Gene

GC12P116083 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC12P116083 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC12P116083 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12P116083 Gene

Genomics for GC12P116083 Gene

GeneHancer (GH) Regulatory Elements for GC12P116083 Gene

Promoters and enhancers for GC12P116083 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J116082 Enhancer 0.2 Ensembl 600.7 -0.1 -72 0.2 GC12P116083 RNU6-1188P GC12P116023 MED13L
GH12J116088 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +5.4 5428 2.8 ZNF121 RUNX3 ATF2 BATF EGR2 GC12P116083 GC12M116089 MED13L
GH12J116098 Enhancer 0.7 Ensembl dbSUPER 0.4 +17.1 17128 2.6 MAFK PKNOX1 ZNF316 ZBTB17 MAFG MAFF EMSY GC12P116083 GC12M116089 MED13L
GH12J116091 Enhancer 0.6 Ensembl 0.4 +9.7 9728 1.8 PRDM1 MZF1 RFX1 LEF1 TCF7L2 ZBTB20 OSR2 PRDM4 GATA3 FEZF1 GC12P116083 GC12M116089 MED13L
GH12J116111 Enhancer 0.7 Ensembl dbSUPER 0.3 +32.2 32228 6.8 ZNF680 PKNOX1 USF1 ZBTB17 GATA3 PRDM6 L3MBTL2 GC12M116089 GC12P116083 MED13L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12P116083 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12P116083 Gene

Genomic Locations for GC12P116083 Gene
chr12:116,082,573-116,082,676
(GRCh38/hg38)
Size:
104 bases
Orientation:
Plus strand

Genomic View for GC12P116083 Gene

Genes around GC12P116083 on UCSC Golden Path with GeneCards custom track

GC12P116083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12P116083 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12P116083 Gene

Proteins for GC12P116083 Gene

Post-translational modifications for GC12P116083 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12P116083 Gene

Domains & Families for GC12P116083 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12P116083 Gene

Function for GC12P116083 Gene

Phenotypes From GWAS Catalog for GC12P116083 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12P116083 Gene

Localization for GC12P116083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12P116083 Gene

Pathways & Interactions for GC12P116083 Gene

PathCards logo

SuperPathways for GC12P116083 Gene

No Data Available

Interacting Proteins for GC12P116083 Gene

Gene Ontology (GO) - Biological Process for GC12P116083 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12P116083 Gene

Drugs & Compounds for GC12P116083 Gene

No Compound Related Data Available

Transcripts for GC12P116083 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12P116083 Gene

No ASD Table

Relevant External Links for GC12P116083 Gene

GeneLoc Exon Structure for
GC12P116083

No data available for mRNA/cDNA for GC12P116083 Gene

Expression for GC12P116083 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12P116083 Gene

Orthologs for GC12P116083 Gene

No data available for Orthologs and Evolution for GC12P116083 Gene

Paralogs for GC12P116083 Gene

No data available for Paralogs for GC12P116083 Gene

Variants for GC12P116083 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12P116083 Gene

Disorders for GC12P116083 Gene

No disorders were found for GC12P116083 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12P116083 Gene

Publications for GC12P116083 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC12P116083 Gene

Products for GC12P116083 Gene

Sources for GC12P116083 Gene

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