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Aliases for GC12P067661 Gene

Subcategory (RNA class) for GC12P067661 Gene

lncRNA

Quality Score for this RNA gene is

15.4

Aliases for GC12P067661 Gene

No Aliases found

ORGUL Members for GC12P067661 Gene

No data available for External Ids for GC12P067661 Gene

Summaries for GC12P067661 Gene

GeneCards Summary for GC12P067661 Gene

GC12P067661 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC12P067661 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

View fRNAdb secondary structures for GC12P067661

Additional gene information for GC12P067661 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12P067661 Gene

Genomics for GC12P067661 Gene

GeneHancer (GH) Regulatory Elements for GC12P067661 Gene

Promoters and enhancers for GC12P067661 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J067661 Enhancer 0.8 ENCODE dbSUPER 650.7 +0.3 291 0.2 SMARCE1 SOX6 JUN DPF2 FOSL1 GATA3 JUND POLR2A SMARCA4 PRDM10 GC12P067661 ENSG00000235872 DYRK2
GH12J067662 Enhancer 0.7 ENCODE dbSUPER 650.7 +1.6 1644 1.6 FOSL1 JUND POLR2A FOS GC12P067661 LINC01479 ENSG00000235872 DYRK2
GH12J067663 Enhancer 0.6 dbSUPER 650.7 +0.6 601 0.3 SMARCE1 SOX6 JUN DPF2 FOSL1 GATA3 JUND POLR2A SMARCA4 PRDM10 GC12P067661 ENSG00000235872 DYRK2
GH12J067646 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -11.8 -11811 5.1 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF48 ZNF121 POLR2B GLIS2 ZNF207 DYRK2 CAND1 LINC01479 GC12P067661
GH12J067667 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +6.2 6172 1 POLR2A ZBTB11 ZSCAN4 MNT ZNF600 LINC01479 ENSG00000235872 GC12P067661
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12P067661 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12P067661 Gene

Genomic Locations for GC12P067661 Gene
chr12:67,661,365-67,662,664
(GRCh38/hg38)
Size:
1,300 bases
Orientation:
Plus strand

Genomic View for GC12P067661 Gene

Genes around GC12P067661 on UCSC Golden Path with GeneCards custom track

GC12P067661 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12P067661 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC12P067661 Gene

ORGUL Member Location for GC12P067661 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC12P067661 Gene

Proteins for GC12P067661 Gene

Post-translational modifications for GC12P067661 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12P067661 Gene

Domains & Families for GC12P067661 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12P067661 Gene

Function for GC12P067661 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12P067661 Gene

Localization for GC12P067661 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12P067661 Gene

Pathways & Interactions for GC12P067661 Gene

SuperPathways for GC12P067661 Gene

No Data Available

Interacting Proteins for GC12P067661 Gene

Gene Ontology (GO) - Biological Process for GC12P067661 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12P067661 Gene

Drugs & Compounds for GC12P067661 Gene

No Compound Related Data Available

Transcripts for GC12P067661 Gene

fRNAdb Secondary structures for GC12P067661 Gene

  • FR313790
  • FR366682
  • FR321733

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for GC12P067661 Gene

No ASD Table

Relevant External Links for GC12P067661 Gene

GeneLoc Exon Structure for
GC12P067661

No data available for mRNA/cDNA for GC12P067661 Gene

Expression for GC12P067661 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12P067661 Gene

Orthologs for GC12P067661 Gene

No data available for Orthologs and Evolution for GC12P067661 Gene

Paralogs for GC12P067661 Gene

No data available for Paralogs for GC12P067661 Gene

Variants for GC12P067661 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12P067661 Gene

Disorders for GC12P067661 Gene

No disorders were found for GC12P067661 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12P067661 Gene

Publications for GC12P067661 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1

Products for GC12P067661 Gene

Sources for GC12P067661 Gene

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