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Aliases for GC12P057094 Gene

Subcategory (RNA class) for GC12P057094 Gene

lncRNA

Quality Score for this RNA gene is

19.4

Aliases for GC12P057094 Gene

No Aliases found

No data available for External Ids for GC12P057094 Gene

Summaries for GC12P057094 Gene

GeneCards Summary for GC12P057094 Gene

GC12P057094 is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for GC12P057094 Gene - the ORGUL cluster for this gene includes several descriptions:

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC12P057094

Additional gene information for GC12P057094 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12P057094 Gene

Genomics for GC12P057094 Gene

GeneHancer (GH) Regulatory Elements for GC12P057094 Gene

Promoters and enhancers for GC12P057094 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J057085 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.7 -2.7 -2743 14.1 SP1 CC2D1A ELF3 ZFX CTCF MNT ZNF148 NKRF MLLT1 CEBPG NAB2 NEMP1 BAZ2A SMARCC2 AGAP2-AS1 PRIM1 PAN2 EEF1AKMT3 ENSG00000258317 ANKRD52
GH12J057109 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 0.4 +16.3 16263 4.1 HDGF ZNF473 MTA3 ZNF652 ZFX ELF3 SP1 CC2D1A CTCF ZNF148 STAT6 NEMP1 EEF1AKMT3 ENSG00000257740 BAZ2A PAN2 SMARCC2 CDK4 ANKRD52 DTX3
GH12J057101 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +7.6 7612 2 ELF3 CBFA2T2 CEBPG RERE NCOA3 TFE3 SP1 PPARG SP5 ZNF384 GC12P057094 GC12P057095 LRP1 STAT6
GH12J057118 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +24.2 24191 2.8 MAFK IKZF1 PRDM10 NFE2L2 PKNOX1 ZNF316 EED NFE2 RUNX3 MAFG NAB2 MYO1A LRP1 TSFM R3HDM2 STAT6 GC12P057094 GC12P057095
GH12J057124 Enhancer 0.9 Ensembl ENCODE 0.3 +29.7 29690 0.6 CC2D1A CTCF ELF1 RAD21 ARID2 ZBTB8A ZNF143 REST TRIM22 SMC3 NEMP1 LRP1 STAT6 GC12P057094 GC12P057095
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12P057094 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12P057094 Gene

Genomic Locations for GC12P057094 Gene
chr12:57,094,810-57,095,473
(GRCh38/hg38)
Size:
664 bases
Orientation:
Plus strand

Genomic View for GC12P057094 Gene

Genes around GC12P057094 on UCSC Golden Path with GeneCards custom track

GC12P057094 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12P057094 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC12P057094 Gene

ORGUL Member Location for GC12P057094 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC12P057094 Gene

Proteins for GC12P057094 Gene

Post-translational modifications for GC12P057094 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12P057094 Gene

Domains & Families for GC12P057094 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12P057094 Gene

Function for GC12P057094 Gene

Phenotypes From GWAS Catalog for GC12P057094 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12P057094 Gene

Localization for GC12P057094 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12P057094 Gene

Pathways & Interactions for GC12P057094 Gene

PathCards logo

SuperPathways for GC12P057094 Gene

No Data Available

Interacting Proteins for GC12P057094 Gene

Gene Ontology (GO) - Biological Process for GC12P057094 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12P057094 Gene

Drugs & Compounds for GC12P057094 Gene

No Compound Related Data Available

Transcripts for GC12P057094 Gene

fRNAdb Secondary structures for GC12P057094 Gene

  • FR002574
  • FR024868
  • FR298618

Alternative Splicing Database (ASD) splice patterns (SP) for GC12P057094 Gene

No ASD Table

Relevant External Links for GC12P057094 Gene

GeneLoc Exon Structure for
GC12P057094

No data available for mRNA/cDNA for GC12P057094 Gene

Expression for GC12P057094 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12P057094 Gene

Orthologs for GC12P057094 Gene

No data available for Orthologs and Evolution for GC12P057094 Gene

Paralogs for GC12P057094 Gene

No data available for Paralogs for GC12P057094 Gene

Variants for GC12P057094 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12P057094 Gene

Disorders for GC12P057094 Gene

No disorders were found for GC12P057094 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12P057094 Gene

Publications for GC12P057094 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  4. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. (PMID: 16273071) Washietl S … Stadler PF (Nature biotechnology 2005) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

No data available for External Links for GC12P057094 Gene

Products for GC12P057094 Gene

Sources for GC12P057094 Gene

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