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Aliases for GC12P051989 Gene

Subcategory (RNA class) for GC12P051989 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC12P051989 Gene

No Aliases found

ORGUL Members for GC12P051989 Gene

No data available for External Ids for GC12P051989 Gene

Summaries for GC12P051989 Gene

GeneCards Summary for GC12P051989 Gene

GC12P051989 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC12P051989 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC12P051989 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12P051989 Gene

Genomics for GC12P051989 Gene

GeneHancer (GH) Regulatory Elements for GC12P051989 Gene

Promoters and enhancers for GC12P051989 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J051951 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.3 -33.9 -33912 6.3 ZFX ZKSCAN8 CBFA2T2 ZNF148 ZNF121 CEBPG ZSCAN21 ZBTB7A YY1 TRIM24 ACVR1B GC12P051989
GH12J051969 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 0.4 -15.1 -15074 5.2 SP1 ZNF652 CC2D1A CTCF CBFA2T2 ZNF148 ZNF121 CEBPG JUND TRIM24 NR4A1 GRASP ACVR1B ACVRL1 ANKRD33 GC12P051989
GH12J051980 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -7.5 -7455 1.6 CC2D1A ELF3 CTCF MAFK SP1 RAD21 RXRA ARID2 PRDM10 ZNF143 GRASP NR4A1 ACVRL1 ANKRD33 ACVR1B GC12P051989
GH12J051975 Enhancer 1.1 ENCODE dbSUPER 0.4 -10.6 -10607 2.5 ZNF652 ELF3 CEBPG SP1 HNF1A ZNF644 SMARCA4 KAT8 RXRA IKZF1 ACVR1B GRASP NR4A1 ACVRL1 ANKRD33 ENSG00000260473 GC12P051989
GH12J051958 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -26.3 -26314 5.2 ELF3 CEBPG SP1 PRDM1 ZNF644 KAT8 PKNOX1 RXRA CEBPA GATAD2A RNU6-574P NR4A1 GRASP ENSG00000260473 ACVR1B GC12P051989
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12P051989 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12P051989 Gene

Genomic Locations for GC12P051989 Gene
chr12:51,987,656-51,987,763
(GRCh38/hg38)
Size:
108 bases
Orientation:
Plus strand

Genomic View for GC12P051989 Gene

Genes around GC12P051989 on UCSC Golden Path with GeneCards custom track

GC12P051989 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12P051989 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12P051989 Gene

Proteins for GC12P051989 Gene

Post-translational modifications for GC12P051989 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12P051989 Gene

Domains & Families for GC12P051989 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12P051989 Gene

Function for GC12P051989 Gene

Phenotypes From GWAS Catalog for GC12P051989 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12P051989 Gene

Localization for GC12P051989 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12P051989 Gene

Pathways & Interactions for GC12P051989 Gene

PathCards logo

SuperPathways for GC12P051989 Gene

No Data Available

Interacting Proteins for GC12P051989 Gene

Gene Ontology (GO) - Biological Process for GC12P051989 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12P051989 Gene

Drugs & Compounds for GC12P051989 Gene

No Compound Related Data Available

Transcripts for GC12P051989 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12P051989 Gene

No ASD Table

Relevant External Links for GC12P051989 Gene

GeneLoc Exon Structure for
GC12P051989

No data available for mRNA/cDNA for GC12P051989 Gene

Expression for GC12P051989 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12P051989 Gene

Orthologs for GC12P051989 Gene

No data available for Orthologs and Evolution for GC12P051989 Gene

Paralogs for GC12P051989 Gene

No data available for Paralogs for GC12P051989 Gene

Variants for GC12P051989 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12P051989 Gene

Disorders for GC12P051989 Gene

No disorders were found for GC12P051989 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12P051989 Gene

Publications for GC12P051989 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC12P051989 Gene

Products for GC12P051989 Gene

Sources for GC12P051989 Gene

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