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Aliases for GC12P000428 Gene

Subcategory (RNA class) for GC12P000428 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC12P000428 Gene

No Aliases found

No data available for External Ids for GC12P000428 Gene

Summaries for GC12P000428 Gene

GeneCards Summary for GC12P000428 Gene

GC12P000428 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC12P000428 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for GC12P000428

Additional gene information for GC12P000428 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12P000428 Gene

Genomics for GC12P000428 Gene

GeneHancer (GH) Regulatory Elements for GC12P000428 Gene

Promoters and enhancers for GC12P000428 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000400 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 -25.8 -25787 2.2 ZFX SP1 SIX5 NKRF POLR2A MLLT1 CEBPG GTF2F1 ZSCAN21 CTCF KDM5A LOC105369594 CCDC77 WASH8P ENSG00000256948 GC12P000428
GH12J000406 Enhancer 1.5 VISTA Ensembl ENCODE 0.4 -19.9 -19942 3.5 CBFA2T2 ZSCAN21 BACH1 MAFK TRIM24 SP7 PRDM1 SMARCA4 DPF2 IKZF1 CCDC77 RAD52 B4GALNT3 SLC6A13 LOC102723544 LOC105369594 GC12P000428
GH12J000423 Enhancer 0.2 Ensembl 0.7 -4.2 -4187 0.2 GC12P000428 LOC105369594 CCDC77
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12P000428 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12P000428 Gene

Genomic Locations for GC12P000428 Gene
chr12:427,688-427,724
(GRCh38/hg38)
Size:
37 bases
Orientation:
Plus strand

Genomic View for GC12P000428 Gene

Genes around GC12P000428 on UCSC Golden Path with GeneCards custom track

GC12P000428 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12P000428 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC12P000428 Gene

ORGUL Member Location for GC12P000428 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC12P000428 Gene

Proteins for GC12P000428 Gene

Post-translational modifications for GC12P000428 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12P000428 Gene

Domains & Families for GC12P000428 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12P000428 Gene

Function for GC12P000428 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12P000428 Gene

Localization for GC12P000428 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12P000428 Gene

Pathways & Interactions for GC12P000428 Gene

PathCards logo

SuperPathways for GC12P000428 Gene

No Data Available

Interacting Proteins for GC12P000428 Gene

Gene Ontology (GO) - Biological Process for GC12P000428 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12P000428 Gene

Drugs & Compounds for GC12P000428 Gene

No Compound Related Data Available

Transcripts for GC12P000428 Gene

fRNAdb Secondary structures for GC12P000428 Gene

  • FR050780
  • FR052969
  • FR398335

Alternative Splicing Database (ASD) splice patterns (SP) for GC12P000428 Gene

No ASD Table

Relevant External Links for GC12P000428 Gene

GeneLoc Exon Structure for
GC12P000428

No data available for mRNA/cDNA for GC12P000428 Gene

Expression for GC12P000428 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12P000428 Gene

Orthologs for GC12P000428 Gene

No data available for Orthologs and Evolution for GC12P000428 Gene

Paralogs for GC12P000428 Gene

No data available for Paralogs for GC12P000428 Gene

Variants for GC12P000428 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12P000428 Gene

Disorders for GC12P000428 Gene

No disorders were found for GC12P000428 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12P000428 Gene

Publications for GC12P000428 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC12P000428 Gene

Products for GC12P000428 Gene

Sources for GC12P000428 Gene

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