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Aliases for GC12P000235 Gene

Subcategory (RNA class) for GC12P000235 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for GC12P000235 Gene

No Aliases found

No data available for External Ids for GC12P000235 Gene

Summaries for GC12P000235 Gene

GeneCards Summary for GC12P000235 Gene

GC12P000235 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for GC12P000235 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for GC12P000235 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12P000235 Gene

Genomics for GC12P000235 Gene

GeneHancer (GH) Regulatory Elements for GC12P000235 Gene

Promoters and enhancers for GC12P000235 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000236 Enhancer 0.8 ENCODE 600.7 +1.8 1789 1.3 ELF3 CEBPG SP1 SP5 RXRA CEBPA GATAD2A IRF2 KMT2B JUND GC12P000235 SLC6A13 CCDC77 GC12M000239
GH12J000237 Enhancer 0.3 ENCODE 600.7 +1.1 1077 0 ZNF3 GC12P000235 GC12M000239 SLC6A13
GH12J000214 Promoter/Enhancer 1.4 EPDnew Ensembl dbSUPER 0.3 -21.0 -21017 0.4 ZFHX2 ZNF398 EGR2 SLC6A12 GC12P000235
GH12J000232 Enhancer 0.7 Ensembl ENCODE 0.7 -2.1 -2149 2 ZNF341 USF1 VEZF1 MAX LOC101929384 ENSG00000255671 LOC102723544 SLC6A13 ENSG00000256694 GC12P000235 SLC6A12
GH12J000219 Enhancer 1 ENCODE dbSUPER 0.4 -15.6 -15568 0.2 SP1 ELF3 CTCF ZNF121 SP7 ELF1 PRDM1 RAD21 GLIS2 GATAD2A SLC6A12 GC12P000235
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12P000235 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12P000235 Gene

Genomic Locations for GC12P000235 Gene
chr12:235,618-235,649
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand

Genomic View for GC12P000235 Gene

Genes around GC12P000235 on UCSC Golden Path with GeneCards custom track

GC12P000235 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12P000235 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC12P000235 Gene

ORGUL Member Location for GC12P000235 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC12P000235 Gene

Proteins for GC12P000235 Gene

Post-translational modifications for GC12P000235 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12P000235 Gene

Domains & Families for GC12P000235 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12P000235 Gene

Function for GC12P000235 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12P000235 Gene

Localization for GC12P000235 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12P000235 Gene

Pathways & Interactions for GC12P000235 Gene

PathCards logo

SuperPathways for GC12P000235 Gene

No Data Available

Interacting Proteins for GC12P000235 Gene

Gene Ontology (GO) - Biological Process for GC12P000235 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12P000235 Gene

Drugs & Compounds for GC12P000235 Gene

No Compound Related Data Available

Transcripts for GC12P000235 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12P000235 Gene

No ASD Table

Relevant External Links for GC12P000235 Gene

GeneLoc Exon Structure for
GC12P000235

No data available for mRNA/cDNA for GC12P000235 Gene

Expression for GC12P000235 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12P000235 Gene

Orthologs for GC12P000235 Gene

No data available for Orthologs and Evolution for GC12P000235 Gene

Paralogs for GC12P000235 Gene

No data available for Paralogs for GC12P000235 Gene

Variants for GC12P000235 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12P000235 Gene

Disorders for GC12P000235 Gene

No disorders were found for GC12P000235 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12P000235 Gene

Publications for GC12P000235 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC12P000235 Gene

Products for GC12P000235 Gene

Sources for GC12P000235 Gene

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