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Aliases for GC12M108792 Gene

Subcategory (RNA class) for GC12M108792 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC12M108792 Gene

No Aliases found

ORGUL Members for GC12M108792 Gene

No data available for External Ids for GC12M108792 Gene

Summaries for GC12M108792 Gene

GeneCards Summary for GC12M108792 Gene

GC12M108792 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC12M108792 Gene

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

Additional gene information for GC12M108792 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M108792 Gene

Genomics for GC12M108792 Gene

GeneHancer (GH) Regulatory Elements for GC12M108792 Gene

Promoters and enhancers for GC12M108792 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J108777 Enhancer 0.5 dbSUPER 600.7 +0.5 502 1.5 ZNF239 SCRT1 BCOR ZNF768 ZMYM3 ENSG00000273499 GC12M108792 GC12P108779 ENSG00000280110 CORO1C SELPLG RNU7-169P GC12M108793 GC12P108772 SSH1
GH12J108771 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 +4.9 4891 3.6 ELF3 MNT CBFA2T2 CEBPG RERE GTF2F1 TFE3 SP1 SP5 CREM GC12P108772 CORO1C RNU7-169P SELPLG ENSG00000273499 GC12M108792
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M108792 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M108792 Gene

Genomic Locations for GC12M108792 Gene
chr12:108,778,143-108,778,271
(GRCh38/hg38)
Size:
129 bases
Orientation:
Minus strand

Genomic View for GC12M108792 Gene

Genes around GC12M108792 on UCSC Golden Path with GeneCards custom track

GC12M108792 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M108792 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M108792 Gene

Proteins for GC12M108792 Gene

Post-translational modifications for GC12M108792 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M108792 Gene

Domains & Families for GC12M108792 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M108792 Gene

Function for GC12M108792 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M108792 Gene

Localization for GC12M108792 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M108792 Gene

Pathways & Interactions for GC12M108792 Gene

PathCards logo

SuperPathways for GC12M108792 Gene

No Data Available

Interacting Proteins for GC12M108792 Gene

Gene Ontology (GO) - Biological Process for GC12M108792 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M108792 Gene

Drugs & Compounds for GC12M108792 Gene

No Compound Related Data Available

Transcripts for GC12M108792 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M108792 Gene

No ASD Table

Relevant External Links for GC12M108792 Gene

GeneLoc Exon Structure for
GC12M108792

No data available for mRNA/cDNA for GC12M108792 Gene

Expression for GC12M108792 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M108792 Gene

Orthologs for GC12M108792 Gene

No data available for Orthologs and Evolution for GC12M108792 Gene

Paralogs for GC12M108792 Gene

No data available for Paralogs for GC12M108792 Gene

Variants for GC12M108792 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M108792 Gene

Disorders for GC12M108792 Gene

No disorders were found for GC12M108792 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M108792 Gene

Publications for GC12M108792 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1
  2. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. (PMID: 9047361) Ofengand J … Bakin A (Journal of molecular biology 1997) 1

No data available for External Links for GC12M108792 Gene

Products for GC12M108792 Gene

Sources for GC12M108792 Gene

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