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Aliases for GC12M097876 Gene

Subcategory (RNA class) for GC12M097876 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for GC12M097876 Gene

No Aliases found

ORGUL Members for GC12M097876 Gene

No data available for External Ids for GC12M097876 Gene

Summaries for GC12M097876 Gene

GeneCards Summary for GC12M097876 Gene

GC12M097876 is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for GC12M097876 Gene

  • C_D_box_snoRNA: Most box C/D snoRNAs also contain long (>10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'.

Additional gene information for GC12M097876 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M097876 Gene

Genomics for GC12M097876 Gene

GeneHancer (GH) Regulatory Elements for GC12M097876 Gene

Promoters and enhancers for GC12M097876 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J097921 Enhancer 0.6 Ensembl ENCODE 0.3 -46.1 -46135 1.3 JUN FOS GC12P097926 GC12M097876
GH12J097823 Enhancer 0.4 UCNEbase 0.2 +53.0 53010 0.2 GC12M097805 GC12M097876
GH12J097923 Enhancer 0.3 Ensembl 0.3 -47.7 -47706 0.2 FOSL2 GC12P097926 GC12M097876
GH12J097898 Enhancer 0.2 Ensembl 0.3 -22.2 -22205 0.4 GC12M097876 GC12P097926
GH12J097839 Enhancer 0.2 Ensembl 0.3 +36.5 36494 1.4 MIR135A2 GC12M097805 GC12M097876
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M097876 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M097876 Gene

Genomic Locations for GC12M097876 Gene
chr12:97,876,119-97,876,195
(GRCh38/hg38)
Size:
77 bases
Orientation:
Minus strand

Genomic View for GC12M097876 Gene

Genes around GC12M097876 on UCSC Golden Path with GeneCards custom track

GC12M097876 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M097876 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M097876 Gene

Proteins for GC12M097876 Gene

Post-translational modifications for GC12M097876 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M097876 Gene

Domains & Families for GC12M097876 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M097876 Gene

Function for GC12M097876 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M097876 Gene

Localization for GC12M097876 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M097876 Gene

Pathways & Interactions for GC12M097876 Gene

PathCards logo

SuperPathways for GC12M097876 Gene

No Data Available

Interacting Proteins for GC12M097876 Gene

Gene Ontology (GO) - Biological Process for GC12M097876 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M097876 Gene

Drugs & Compounds for GC12M097876 Gene

No Compound Related Data Available

Transcripts for GC12M097876 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M097876 Gene

No ASD Table

Relevant External Links for GC12M097876 Gene

GeneLoc Exon Structure for
GC12M097876

No data available for mRNA/cDNA for GC12M097876 Gene

Expression for GC12M097876 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M097876 Gene

Orthologs for GC12M097876 Gene

No data available for Orthologs and Evolution for GC12M097876 Gene

Paralogs for GC12M097876 Gene

No data available for Paralogs for GC12M097876 Gene

Variants for GC12M097876 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M097876 Gene

Disorders for GC12M097876 Gene

No disorders were found for GC12M097876 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M097876 Gene

Publications for GC12M097876 Gene

  1. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. (PMID: 9819378) Smith CM … Steitz JA (Molecular and cellular biology 1998) 1

No data available for External Links for GC12M097876 Gene

Products for GC12M097876 Gene

Sources for GC12M097876 Gene

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