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Aliases for GC12M062851 Gene

Subcategory (RNA class) for GC12M062851 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC12M062851 Gene

No Aliases found

ORGUL Members for GC12M062851 Gene

No data available for External Ids for GC12M062851 Gene

Summaries for GC12M062851 Gene

GeneCards Summary for GC12M062851 Gene

GC12M062851 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC12M062851 Gene

  • U1_snRNA: U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV.

Additional gene information for GC12M062851 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M062851 Gene

Genomics for GC12M062851 Gene

GeneHancer (GH) Regulatory Elements for GC12M062851 Gene

Promoters and enhancers for GC12M062851 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J062933 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.2 -83.5 -83500 3.6 ZNF652 SP1 CC2D1A ELF3 MNT CBFA2T2 ZNF148 MLLT1 ZNF121 CEBPG ENSG00000252660 GC12P062936 PPM1H MON2 ENSG00000257354 RXYLT1 ENSG00000257779 GC12M062851 RNU1-83P
GH12J062848 Enhancer 0.6 ENCODE 0.7 +2.1 2108 0.7 ZSCAN21 ZNF692 FOS ZFP69B FOSL2 ZNF366 JUND GFI1B BCL6B GC12M062851 RNU1-83P LOC105369795 PPM1H
GH12J062864 Enhancer 0.9 Ensembl ENCODE 0.4 -15.8 -15759 3.7 PPARG PRDM1 IKZF1 ZIC2 GATAD2A TCF7L2 SMARCC2 BRCA1 SP1 ATF3 ENSG00000252660 PPM1H GC12M062851 RNU1-83P LOC105369795
GH12J062891 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -41.7 -41700 2.4 ELF3 CEBPG RERE HNF1A PPARG ZNF384 ZNF644 SMARCA4 KAT8 HMG20B RNU1-83P PPM1H ENSG00000252660 MON2 DPY19L2 GC12M062851 LOC105369795
GH12J062861 Enhancer 0.8 FANTOM5 ENCODE 0.4 -11.7 -11727 1.3 ZNF629 CEBPB JUN ZBTB20 JUND FOS EP300 FOSL2 MAFF PPM1H ENSG00000252660 GC12M062851 RNU1-83P LOC105369795
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M062851 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M062851 Gene

Genomic Locations for GC12M062851 Gene
chr12:62,850,737-62,850,901
(GRCh38/hg38)
Size:
165 bases
Orientation:
Minus strand

Genomic View for GC12M062851 Gene

Genes around GC12M062851 on UCSC Golden Path with GeneCards custom track

GC12M062851 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M062851 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M062851 Gene

Proteins for GC12M062851 Gene

Post-translational modifications for GC12M062851 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M062851 Gene

Domains & Families for GC12M062851 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M062851 Gene

Function for GC12M062851 Gene

Phenotypes From GWAS Catalog for GC12M062851 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M062851 Gene

Localization for GC12M062851 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M062851 Gene

Pathways & Interactions for GC12M062851 Gene

PathCards logo

SuperPathways for GC12M062851 Gene

No Data Available

Interacting Proteins for GC12M062851 Gene

Gene Ontology (GO) - Biological Process for GC12M062851 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M062851 Gene

Drugs & Compounds for GC12M062851 Gene

No Compound Related Data Available

Transcripts for GC12M062851 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M062851 Gene

No ASD Table

Relevant External Links for GC12M062851 Gene

GeneLoc Exon Structure for
GC12M062851

No data available for mRNA/cDNA for GC12M062851 Gene

Expression for GC12M062851 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M062851 Gene

Orthologs for GC12M062851 Gene

No data available for Orthologs and Evolution for GC12M062851 Gene

Paralogs for GC12M062851 Gene

No data available for Paralogs for GC12M062851 Gene

Variants for GC12M062851 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M062851 Gene

Disorders for GC12M062851 Gene

No disorders were found for GC12M062851 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M062851 Gene

Publications for GC12M062851 Gene

  1. Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA. (PMID: 11297556) Katsamba PS … Laird-Offringa IA (The Journal of biological chemistry 2001) 1
  2. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  3. Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. (PMID: 7984237) Oubridge C … Nagai K (Nature 1994) 1
  4. Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains both universal and yeast-specific domains. (PMID: 2405391) Kretzner L … Rosbash M (Proceedings of the National Academy of Sciences of the United States of America 1990) 1

No data available for External Links for GC12M062851 Gene

Products for GC12M062851 Gene

Sources for GC12M062851 Gene

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