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Aliases for GC12M062335 Gene

Subcategory (RNA class) for GC12M062335 Gene

snRNA

Quality Score for this RNA gene is

15

Aliases for GC12M062335 Gene

No Aliases found

ORGUL Members for GC12M062335 Gene

No data available for External Ids for GC12M062335 Gene

Summaries for GC12M062335 Gene

GeneCards Summary for GC12M062335 Gene

GC12M062335 is an RNA Gene, and is affiliated with the snRNA class.

fRNAdb sequence ontologies for GC12M062335 Gene

  • U6_snRNA: U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA.

Additional gene information for GC12M062335 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M062335 Gene

Genomics for GC12M062335 Gene

GeneHancer (GH) Regulatory Elements for GC12M062335 Gene

Promoters and enhancers for GC12M062335 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J062332 Enhancer 0.5 Ensembl ENCODE 600.7 +1.3 1316 0.2 FOS GC12M062335 RNU6-595P TAFA2 USP15
GH12J062334 Enhancer 0.5 Ensembl dbSUPER 600.7 -1.4 -1404 3.2 HES1 GC12M062335 RNU6-595P USP15 TAFA2 ENSG00000275881
GH12J062319 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.6 14596 2 CC2D1A CBFA2T2 TRIM24 SMARCA4 ZNF316 SOX6 TCF12 PHB2 POLR2A EHMT2 MON2 ENSG00000257354 USP15 ENSG00000257568 TAFA2 LINC01465 GC12M062335 RNU6-595P
GH12J062327 Enhancer 0.7 Ensembl dbSUPER 0.4 +5.1 5096 2.6 ZNF316 MAFG MAFK NFE2 ZBTB40 EMSY USP15 TAFA2 RNU6-595P GC12M062335
GH12J062317 Enhancer 0.6 Ensembl dbSUPER 0.4 +16.9 16896 0.6 ZNF316 MAFK EMSY USP15 GC12M062335 RNU6-595P TAFA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M062335 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M062335 Gene

Genomic Locations for GC12M062335 Gene
chr12:62,334,090-62,334,197
(GRCh38/hg38)
Size:
108 bases
Orientation:
Minus strand

Genomic View for GC12M062335 Gene

Genes around GC12M062335 on UCSC Golden Path with GeneCards custom track

GC12M062335 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M062335 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M062335 Gene

Proteins for GC12M062335 Gene

Post-translational modifications for GC12M062335 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M062335 Gene

Domains & Families for GC12M062335 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M062335 Gene

Function for GC12M062335 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M062335 Gene

Localization for GC12M062335 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M062335 Gene

Pathways & Interactions for GC12M062335 Gene

PathCards logo

SuperPathways for GC12M062335 Gene

No Data Available

Interacting Proteins for GC12M062335 Gene

Gene Ontology (GO) - Biological Process for GC12M062335 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M062335 Gene

Drugs & Compounds for GC12M062335 Gene

No Compound Related Data Available

Transcripts for GC12M062335 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M062335 Gene

No ASD Table

Relevant External Links for GC12M062335 Gene

GeneLoc Exon Structure for
GC12M062335

No data available for mRNA/cDNA for GC12M062335 Gene

Expression for GC12M062335 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M062335 Gene

Orthologs for GC12M062335 Gene

No data available for Orthologs and Evolution for GC12M062335 Gene

Paralogs for GC12M062335 Gene

No data available for Paralogs for GC12M062335 Gene

Variants for GC12M062335 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M062335 Gene

Disorders for GC12M062335 Gene

No disorders were found for GC12M062335 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M062335 Gene

Publications for GC12M062335 Gene

  1. The uRNA database. (PMID: 9016512) Zwieb C (Nucleic acids research 1997) 1
  2. Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions. (PMID: 1960724) Orum H … Engberg J (Journal of molecular biology 1991) 1
  3. The spliceosomal snRNAs of Caenorhabditis elegans. (PMID: 2339054) Thomas J … Blumenthal T (Nucleic acids research 1990) 1

No data available for External Links for GC12M062335 Gene

Products for GC12M062335 Gene

Sources for GC12M062335 Gene

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