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Aliases for GC12M053411 Gene

Subcategory (RNA class) for GC12M053411 Gene

SRP

Quality Score for this RNA gene is

15

Aliases for GC12M053411 Gene

No Aliases found

ORGUL Members for GC12M053411 Gene

No data available for External Ids for GC12M053411 Gene

Summaries for GC12M053411 Gene

GeneCards Summary for GC12M053411 Gene

GC12M053411 is an RNA Gene, and is affiliated with the SRP RNA class.

Additional gene information for GC12M053411 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC12M053411 Gene

Genomics for GC12M053411 Gene

GeneHancer (GH) Regulatory Elements for GC12M053411 Gene

Promoters and enhancers for GC12M053411 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053386 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 0.4 +19.4 19430 6.7 ZNF121 ZNF384 SP7 SP1 PRDM1 MLLT1 CREB1 POLR2A ZNF600 PRDM10 SP1 AAAS SMUG1 PRR13 ATP5MC2 ESPL1 PIR43704 GC12M053411
GH12J053420 Enhancer 1 ENCODE 0.4 -12.8 -12817 2.1 SP1 CC2D1A CTCF ZNF384 ZSCAN21 RELA SP7 POLR2A PPARG PRDM1 GC12P053422 SP1 SP7 AAAS PFDN5 C12orf10 MAP3K12 TARBP2 NPFF ESPL1
GH12J053417 Enhancer 0.7 ENCODE 0.4 -9.3 -9260 1 CREM MLLT1 IKZF1 PKNOX1 IKZF2 TRIM22 RUNX3 POLR2A NBN JUNB SP1 AAAS SP7 MAP3K12 TARBP2 NPFF C12orf10 PFDN5 ATP5MC2 GC12P053422
GH12J053411 Enhancer 0.4 Ensembl 0.7 -3.0 -3001 0.4 ZNF610 HIC1 GC12M053411 GC12P053422 SP1
GH12J053415 Enhancer 0.6 ENCODE 0.4 -7.0 -7033 1.3 IKZF1 ZNF692 OSR2 ZBTB48 NFIC ZFHX2 RCOR1 ZNF398 EGR2 PRR13 PCBP2 SP7 AAAS TARBP2 MAP3K12 NPFF C12orf10 PFDN5 GC12P053422
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M053411 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M053411 Gene

Genomic Locations for GC12M053411 Gene
chr12:53,408,145-53,408,400
(GRCh38/hg38)
Size:
256 bases
Orientation:
Minus strand

Genomic View for GC12M053411 Gene

Genes around GC12M053411 on UCSC Golden Path with GeneCards custom track

GC12M053411 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M053411 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M053411 Gene

Proteins for GC12M053411 Gene

Post-translational modifications for GC12M053411 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M053411 Gene

Domains & Families for GC12M053411 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M053411 Gene

Function for GC12M053411 Gene

Phenotypes From GWAS Catalog for GC12M053411 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M053411 Gene

Localization for GC12M053411 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M053411 Gene

Pathways & Interactions for GC12M053411 Gene

PathCards logo

SuperPathways for GC12M053411 Gene

No Data Available

Interacting Proteins for GC12M053411 Gene

Gene Ontology (GO) - Biological Process for GC12M053411 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M053411 Gene

Drugs & Compounds for GC12M053411 Gene

No Compound Related Data Available

Transcripts for GC12M053411 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M053411 Gene

No ASD Table

Relevant External Links for GC12M053411 Gene

GeneLoc Exon Structure for
GC12M053411

No data available for mRNA/cDNA for GC12M053411 Gene

Expression for GC12M053411 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M053411 Gene

Orthologs for GC12M053411 Gene

No data available for Orthologs and Evolution for GC12M053411 Gene

Paralogs for GC12M053411 Gene

No data available for Paralogs for GC12M053411 Gene

Variants for GC12M053411 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M053411 Gene

Disorders for GC12M053411 Gene

No disorders were found for GC12M053411 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M053411 Gene

Publications for GC12M053411 Gene

  1. SRPDB: Signal Recognition Particle Database. (PMID: 12520023) Rosenblad MA … Samuelsson T (Nucleic acids research 2003) 1
  2. Towards the structure of the mammalian signal recognition particle. (PMID: 11839493) Wild K … Cusack S (Current opinion in structural biology 2002) 1
  3. Prediction of signal recognition particle RNA genes. (PMID: 12140321) Regalia M … Samuelsson T (Nucleic acids research 2002) 1
  4. Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle. (PMID: 11243816) Batey RT … Doudna JA (Journal of molecular biology 2001) 1
  5. Crystal structure of the ribonucleoprotein core of the signal recognition particle. (PMID: 10678824) Batey RT … Doudna JA (Science (New York, N.Y.) 2000) 1

No data available for External Links for GC12M053411 Gene

Products for GC12M053411 Gene

Sources for GC12M053411 Gene

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