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Aliases for GC12M052898 Gene

Subcategory (RNA class) for GC12M052898 Gene

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Quality Score for this RNA gene is

19

Aliases for GC12M052898 Gene

No Aliases found

ORGUL Members for GC12M052898 Gene

No data available for External Ids for GC12M052898 Gene

Summaries for GC12M052898 Gene

GeneCards Summary for GC12M052898 Gene

GC12M052898 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC12M052898 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for GC12M052898

Additional gene information for GC12M052898 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M052898 Gene

Genomics for GC12M052898 Gene

GeneHancer (GH) Regulatory Elements for GC12M052898 Gene

Promoters and enhancers for GC12M052898 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J052894 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.6 -5595 16.1 MTA3 ZNF652 ZFX CC2D1A SP1 ELF3 CTCF MNT CBFA2T2 ZNF148 GC12M052900 ZNF740 AAAS PCBP2 SP1 MAP3K12 LOC100652999 ENSG00000257808 ATF7 TARBP2
GH12J052887 Enhancer 0.4 Ensembl dbSUPER 0.4 +8.8 8832 0.2 KRT18 KRT78 KRT4 KRT84 IGFBP6 SOAT2 KRT8 PFDN5 RPL7P41 GC12M052898
GH12J052891 Enhancer 0.4 FANTOM5 0.4 +6.1 6083 0.3 POLR2A KRT18 KRT78 KRT79 KRT4 KRT84 KRT8 KRT83 ZNF740 SP1 GC12M052898
GH12J052886 Enhancer 0.3 dbSUPER 0.4 +10.4 10375 0.9 GATA3 RPL7P41 KRT18 KRT78 KRT4 KRT84 SOAT2 IGFBP6 GC12M052898 GC12M052899
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M052898 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M052898 Gene

Genomic Locations for GC12M052898 Gene
chr12:52,897,192-52,897,333
(GRCh38/hg38)
Size:
142 bases
Orientation:
Minus strand

Genomic View for GC12M052898 Gene

Genes around GC12M052898 on UCSC Golden Path with GeneCards custom track

GC12M052898 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M052898 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC12M052898 Gene

ORGUL Member Location for GC12M052898 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M052898 Gene

Proteins for GC12M052898 Gene

Post-translational modifications for GC12M052898 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M052898 Gene

Domains & Families for GC12M052898 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M052898 Gene

Function for GC12M052898 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M052898 Gene

Localization for GC12M052898 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M052898 Gene

Pathways & Interactions for GC12M052898 Gene

PathCards logo

SuperPathways for GC12M052898 Gene

No Data Available

Interacting Proteins for GC12M052898 Gene

Gene Ontology (GO) - Biological Process for GC12M052898 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M052898 Gene

Drugs & Compounds for GC12M052898 Gene

No Compound Related Data Available

Transcripts for GC12M052898 Gene

fRNAdb Secondary structures for GC12M052898 Gene

  • FR205293

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M052898 Gene

No ASD Table

Relevant External Links for GC12M052898 Gene

GeneLoc Exon Structure for
GC12M052898

No data available for mRNA/cDNA for GC12M052898 Gene

Expression for GC12M052898 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M052898 Gene

Orthologs for GC12M052898 Gene

No data available for Orthologs and Evolution for GC12M052898 Gene

Paralogs for GC12M052898 Gene

No data available for Paralogs for GC12M052898 Gene

Variants for GC12M052898 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M052898 Gene

Disorders for GC12M052898 Gene

No disorders were found for GC12M052898 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M052898 Gene

Publications for GC12M052898 Gene

  1. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1
  3. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

No data available for External Links for GC12M052898 Gene

Products for GC12M052898 Gene

Sources for GC12M052898 Gene

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