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Aliases for GC12M003040 Gene

Subcategory (RNA class) for GC12M003040 Gene

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Quality Score for this RNA gene is

13.2

Aliases for GC12M003040 Gene

No Aliases found

ORGUL Members for GC12M003040 Gene

No data available for External Ids for GC12M003040 Gene

Summaries for GC12M003040 Gene

GeneCards Summary for GC12M003040 Gene

GC12M003040 is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for GC12M003040 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for GC12M003040

Additional gene information for GC12M003040 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for GC12M003040 Gene

Genomics for GC12M003040 Gene

GeneHancer (GH) Regulatory Elements for GC12M003040 Gene

Promoters and enhancers for GC12M003040 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J003041 Enhancer 0.6 ENCODE 600.7 -1.5 -1478 0.2 CTCF RAD21 ZBTB20 MAZ RUNX3 SMC3 WT1 ZNF654 ZNF143 VEZF1 ENSG00000250899 GC12M003040 PIR51354 ENSG00000234589 RPL13AP24
GH12J003030 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +7.7 7663 4.5 CTCF RAD21 ZNF600 PRDM10 ZNF143 REST PATZ1 ZNF341 EGR1 ZNF10 TSPAN9 NRIP2 FOXM1 RHNO1 TULP3 ITFG2 FKBP4 GC12M003040 GC12P002971 TEAD4
GH12J003035 Enhancer 0.7 Ensembl dbSUPER 0.7 +4.2 4151 0.6 CTCF POLR2A RAD21 ZNF654 TSPAN9 NRIP2 FOXM1 RHNO1 TULP3 GC12M003040 GC12P002971 TEAD4
GH12J002997 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +40.8 40754 3.3 CBFA2T2 SP7 EGR1 SMARCA4 GLIS2 DPF2 IKZF1 ZNF600 PRDM10 ZIC2 TEAD4 RNU6-1315P ITFG2 GC12P002971 GC12M003040
GH12J003012 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +26.4 26350 2.6 ZNF121 NR2F2 PRDM4 ZFHX2 EGR2 GC12M003040 GC12P002971 TEAD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC12M003040 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC12M003040 Gene

Genomic Locations for GC12M003040 Gene
chr12:3,040,155-3,040,252
(GRCh38/hg38)
Size:
98 bases
Orientation:
Minus strand

Genomic View for GC12M003040 Gene

Genes around GC12M003040 on UCSC Golden Path with GeneCards custom track

GC12M003040 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC12M003040 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for GC12M003040 Gene

ORGUL Member Location for GC12M003040 gene

No data available for Cytogenetic band and RefSeq DNA sequence for GC12M003040 Gene

Proteins for GC12M003040 Gene

Post-translational modifications for GC12M003040 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC12M003040 Gene

Domains & Families for GC12M003040 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC12M003040 Gene

Function for GC12M003040 Gene

Phenotypes From GWAS Catalog for GC12M003040 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC12M003040 Gene

Localization for GC12M003040 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC12M003040 Gene

Pathways & Interactions for GC12M003040 Gene

PathCards logo

SuperPathways for GC12M003040 Gene

No Data Available

Interacting Proteins for GC12M003040 Gene

Gene Ontology (GO) - Biological Process for GC12M003040 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC12M003040 Gene

Drugs & Compounds for GC12M003040 Gene

No Compound Related Data Available

Transcripts for GC12M003040 Gene

fRNAdb Secondary structures for GC12M003040 Gene

  • FR283414
  • FR141359

Alternative Splicing Database (ASD) splice patterns (SP) for GC12M003040 Gene

No ASD Table

Relevant External Links for GC12M003040 Gene

GeneLoc Exon Structure for
GC12M003040

No data available for mRNA/cDNA for GC12M003040 Gene

Expression for GC12M003040 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC12M003040 Gene

Orthologs for GC12M003040 Gene

No data available for Orthologs and Evolution for GC12M003040 Gene

Paralogs for GC12M003040 Gene

No data available for Paralogs for GC12M003040 Gene

Variants for GC12M003040 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC12M003040 Gene

Disorders for GC12M003040 Gene

No disorders were found for GC12M003040 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC12M003040 Gene

Publications for GC12M003040 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for GC12M003040 Gene

Products for GC12M003040 Gene

Sources for GC12M003040 Gene

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