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Aliases for GC11P117017 Gene

Subcategory (RNA class) for GC11P117017 Gene

Y RNA

Quality Score for this RNA gene is

15

Aliases for GC11P117017 Gene

No Aliases found

ORGUL Members for GC11P117017 Gene

No data available for External Ids for GC11P117017 Gene

Summaries for GC11P117017 Gene

GeneCards Summary for GC11P117017 Gene

GC11P117017 is an RNA Gene, and is affiliated with the Y RNA class.

Additional gene information for GC11P117017 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GC11P117017 Gene

Genomics for GC11P117017 Gene

GeneHancer (GH) Regulatory Elements for GC11P117017 Gene

Promoters and enhancers for GC11P117017 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J117009 Enhancer 1 ENCODE dbSUPER 0.7 -4.7 -4659 2.5 ZNF121 ZSCAN21 SP7 PRDM1 PRDM10 ZEB2 ZNF639 ZNF629 ZNF316 ZBTB44 ENSG00000254851 APOA1 GC11P117017 SIK3
GH11J116983 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 -30.3 -30287 4.2 CEBPG SP7 SP1 PRDM1 ZNF384 IKZF1 POLR2A RXRA IKZF2 CEBPA ENSG00000254851 SIK3 ENSG00000224077 APOA1 PCSK7 RNF214 GC11P117017
GH11J116993 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.3 -21.9 -21861 2.1 RFX1 POLR2A ZBTB20 SIK3 APOA1 ENSG00000254851 ENSG00000224077 BUD13 ENSG00000226645 PCSK7 GC11P117017
GH11J116970 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -43.8 -43795 5 ZNF121 SP7 PKNOX1 ZNF600 ZEB2 ZNF639 KLF7 ZNF629 CTCF FOXA2 APOA1 SIK3 ENSG00000224077 ENSG00000254851 GC11P117017
GH11J116978 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 -35.1 -35052 4 MLLT1 IKZF2 DPF2 RUNX3 BCLAF1 ELF1 NBN CEBPB ATF7 MAX ENSG00000254851 SIK3 APOA1 ENSG00000224077 TAGLN GC11P117017
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around GC11P117017 on UCSC Golden Path with GeneCards custom track

Genomic Locations for GC11P117017 Gene

Genomic Locations for GC11P117017 Gene
chr11:117,015,896-117,015,990
(GRCh38/hg38)
Size:
95 bases
Orientation:
Plus strand

Genomic View for GC11P117017 Gene

Genes around GC11P117017 on UCSC Golden Path with GeneCards custom track

GC11P117017 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for GC11P117017 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for GC11P117017 Gene

Proteins for GC11P117017 Gene

Post-translational modifications for GC11P117017 Gene

No Post-translational modifications

No data available for DME Specific Peptides for GC11P117017 Gene

Domains & Families for GC11P117017 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for GC11P117017 Gene

Function for GC11P117017 Gene

Phenotypes From GWAS Catalog for GC11P117017 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GC11P117017 Gene

Localization for GC11P117017 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for GC11P117017 Gene

Pathways & Interactions for GC11P117017 Gene

PathCards logo

SuperPathways for GC11P117017 Gene

No Data Available

Interacting Proteins for GC11P117017 Gene

Gene Ontology (GO) - Biological Process for GC11P117017 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for GC11P117017 Gene

Drugs & Compounds for GC11P117017 Gene

No Compound Related Data Available

Transcripts for GC11P117017 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for GC11P117017 Gene

No ASD Table

Relevant External Links for GC11P117017 Gene

GeneLoc Exon Structure for
GC11P117017

No data available for mRNA/cDNA for GC11P117017 Gene

Expression for GC11P117017 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for GC11P117017 Gene

Orthologs for GC11P117017 Gene

No data available for Orthologs and Evolution for GC11P117017 Gene

Paralogs for GC11P117017 Gene

No data available for Paralogs for GC11P117017 Gene

Variants for GC11P117017 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for GC11P117017 Gene

Disorders for GC11P117017 Gene

No disorders were found for GC11P117017 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for GC11P117017 Gene

Publications for GC11P117017 Gene

  1. Conserved features of Y RNAs: a comparison of experimentally derived secondary structures. (PMID: 10606662) Teunissen SW … Pruijn GJ (Nucleic acids research 2000) 1
  2. Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation. (PMID: 10766734) Chen X … Wolin SL (Genes & development 2000) 1
  3. Caenorhabditis elegans embryos contain only one major species of Ro RNP. (PMID: 7489501) Van Horn DJ … Wolin SL (RNA (New York, N.Y.) 1995) 1

No data available for External Links for GC11P117017 Gene

Products for GC11P117017 Gene

Sources for GC11P117017 Gene

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